PlanTAP Family TR034

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main family Sigma70 / RpoD
sub family
accession number TR034
category TR
citation(s) Allison (2000), Paget and Helmann (2003)
number of members 485
number of non-redundant members 409
number of members in trees 208
number of queries 3
number of clusters 2
consensus domain(s) IPR000943, IPR007127, IPR007624, IPR007627, IPR007630, IPR007631, IPR009042, IPR011991, IPR012760, IPR013324, IPR013325
last modified 2006-08-02 16:31:40.590638
 

2 contributing PlanTAP Family Cluster(s) with phylogenetic tree(s):
TR034_121TR034_446
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member species taxonomic profile

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in family clusters
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graphical view of the family members' domain structures
 

485 members shown

member_name length description species is a in #clusters in tree redundant representative repr. species domains
Q6F8H5_ACIAD 629 Sigma D (Sigma 70) factor of RNA polymerase , major sigma factor during exponential growth Acinetobacter sp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8KUI1_ACTPA 348 RNA polymerase sigma factor Actinosynnema pretiosum subsp. hit 2 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_AGRT5 684 RNA polymerase sigma factor rpoD (Sigma-A) (Major vegetative sigma factor) Agrobacterium tumefaciens hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q34W26_9GAMM 598 Sigma-70 factor Alkalilimnicola ehrlichei MLHE-1 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8YKW1_ANASP 316 RNA polymerase sigma factor Anabaena sp. hit 1 n n Q3M2L9_ANAVT Anabaena variabilis superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q8ZSA3_ANASP 323 RNA polymerase sigma factor Anabaena sp. hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q9KHE4_ANASP 390 RNA polymerase sigma factor Anabaena sp. hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9KHE5_ANASP 327 RNA polymerase sigma factor Anabaena sp. hit 1 n n Q3MBV9_ANAVT Anabaena variabilis superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q9KHE8_ANASP 332 Group 2 sigma 70-type sigma factor D Anabaena sp. hit 1 n n Q3MBX2_ANAVT Anabaena variabilis HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
RPOD_ANASP 390 RNA polymerase sigma factor rpoD (Sigma-A) Anabaena sp. hit 2 y n Q7U5C4_SYNPX Synechococcus sp. Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
RPSB_ANASP 332 RNA polymerase sigma-B factor Anabaena sp. hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPSC_ANASP 416 RNA polymerase sigma-C factor Anabaena sp. hit 2 y n Q3MDZ8_ANAVT Anabaena variabilis superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3M2L9_ANAVT 316 Sigma-28 Anabaena variabilis hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q3MBV9_ANAVT 327 Sigma 28 (Flagella/Sporulation) Anabaena variabilis hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q3MBX2_ANAVT 332 Sigma 28 (Flagella/Sporulation) Anabaena variabilis hit 2 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q3MDA3_ANAVT 390 Sigma 28 (Flagella/Sporulation) Anabaena variabilis hit 2 y n Q7U5C4_SYNPX Synechococcus sp. Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q3MDW4_ANAVT 378 Sigma 28 (Flagella/Sporulation) Anabaena variabilis hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3MDZ8_ANAVT 416 Sigma 28 (Flagella/Sporulation) Anabaena variabilis hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q4NQA8_9DELT 1380 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Anaeromyxobacter dehalogenans 2CP-C hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5PB07_ANAMM 632 RNA polymerase sigma factor Anaplasma marginale hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O67464_AQUAE 575 RNA polymerase sigma factor RpoD Aquifex aeolicus hit 2 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
At1g08540.1 572 68408.m00853 plastid RNA polymerase sigma-subunit -related similar to GB:BAA22427 and EST gb N65838 Arabidopsis thaliana hit 1 n y Q9MTH3_SINAL Sinapis alba Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
At1g64860.1 502 68408.m06739 plastid RNA polymerase sigma-subunit identical to plastid RNA polymerase sigma-subunit GI:2398851 from [Arabidopsis thaliana] Arabidopsis thaliana hit 1 n y O22057_ARATH Arabidopsis thaliana superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF04542, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
At5g24120.1 517 68412.m02593 sigma-related factor (emb CAA77213.1) Arabidopsis thaliana hit 1 n y Q9ZNX9_ARATH Arabidopsis thaliana superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF04542, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
O22056_ARATH 572 Plastid RNA polymerase sigma-subunit (Sigma factor SigB) (F22O13.2) (T27G7.22) (Sigma factor precursor) Arabidopsis thaliana hit 1 n y Q9MTH3_SINAL Sinapis alba superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O22057_ARATH 502 Plastid RNA polymerase sigma-subunit precursor Arabidopsis thaliana hit 1 y n superfamily:SSF52935, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
O22455_ARATH 574 Sigma factor 2 Arabidopsis thaliana hit 1 n n Q9MTH3_SINAL Sinapis alba HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O22576_ARATH 502 RNA polymerase sigma subunit 1 Arabidopsis thaliana hit 1 n y O22057_ARATH Arabidopsis thaliana superfamily:SSF52935, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
O24629_ARATH 502 Sigma factor 1 (Plastid RNA polymerase sigma factor) (Sigma factor SigA) (RNA polymerase sigma subunit 1) Arabidopsis thaliana hit 1 n y O22057_ARATH Arabidopsis thaliana superfamily:SSF52935, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q8GWC1_ARATH 572 Putative plastid RNA polymerase sigma-subunit SIG1 Arabidopsis thaliana hit 1 n y Q9MTH3_SINAL Sinapis alba superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9FPH1_ARATH 502 At1g64860 Arabidopsis thaliana hit 1 n y O22057_ARATH Arabidopsis thaliana superfamily:SSF52935, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q9T0P0_ARATH 500 Sigma factorB precursor (Fragment) Arabidopsis thaliana hit 1 n y O22057_ARATH Arabidopsis thaliana superfamily:SSF52935, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q9ZNX9_ARATH 517 Sigma-like factor precursor (RNA polymerase sigma subunit SigE) Arabidopsis thaliana hit 1 y n superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q4NCW8_9MICC 441 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Arthrobacter sp. hit 2 y n P95644_RENSA Renibacterium salmoninarum superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4J0N0_AZOVI 620 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Azotobacter vinelandii AvOP hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5WHD0_BACSK 373 DNA-directed RNA polymerase major sigma-43 factor sigma-A Bacillus clausii hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_BACHD 372 RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43) Bacillus halodurans hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q62SN9_BACLD 373 RNA polymerase major sigma-43 factor (Sigma-A) Bacillus licheniformis hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF03979, superfamily:SSF48329, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q65H81_BACLD 373 SigA Bacillus licheniformis hit 1 n y RPSD2_BACSP Bacillus sp HMMPfam:PF03979, superfamily:SSF48329, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPSD2_BACSP 377 RNA polymerase sigma factor rpoD (Sigma-A) Bacillus sp hit 1 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_BACSU 371 RNA polymerase sigma factor rpoD (Sigma-A) (Sigma-43) Bacillus subtilis hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6G2N2_BARHE 667 RNA polymerase sigma factor rpod Bartonella henselae hit 1 n n Q6FZ71_BARQU Bartonella quintana HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6FZ71_BARQU 670 RNA polymerase sigma factor rpod Bartonella quintana hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6MR57_BDEBA 609 RNA polymerase sigma factor RpoD Bdellovibrio bacteriovorus hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7VQR2_BLOFL 617 RNA polymerase sigma-70 factor Blochmannia floridanus hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q493Y1_BLOPB 611 RNA polymerase sigma-70 factor Blochmannia pennsylvanicus hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7WHP5_BORBR 722 RNA polymerase sigma factor 70 Bordetella bronchiseptica hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7W6R1_BORPA 760 RNA polymerase sigma factor 70 Bordetella parapertussis hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
P77833_BORPE 733 RNA polymerase sigma 80 subunit Bordetella pertussis hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7VWM5_BORPE 760 RNA polymerase sigma factor 70 Bordetella pertussis hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
P94321_BRAJA 719 Primary sigma factor Bradyrhizobium japonicum hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q359W2_9BRAD 702 Primary sigma factor Bradyrhizobium sp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9ANT6_9CORY 331 Sigma factor SigB Brevibacterium flavum hit 2 y n Q4JV99_CORJK Corynebacterium jeikeium superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q9ANT7_9CORY 498 Sigma factor SigA Brevibacterium flavum hit 1 n n Q8FPH4_COREF Corynebacterium efficiens superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2YM26_BRUA2 672 Sigma-70 factor family:Sigma-70 factor, region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essent Brucella abortus hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q57C32_BRUAB 672 RpoD, RNA polymerase sigma-70 factor Brucella abortus hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8YIB2_BRUME 672 RNA POLYMERASE SIGMA FACTOR RPOD Brucella melitensis hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q8FZK2_BRUSU 672 RNA polymerase sigma-70 factor Brucella suis hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
RPOD_BUCAI 612 RNA polymerase sigma factor rpoD (Sigma-70) Buchnera aphidicola subsp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_BUCAP 617 RNA polymerase sigma factor rpoD (Sigma-70) Buchnera aphidicola subsp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_BUCBP 609 RNA polymerase sigma factor rpoD (Sigma-70) Buchnera aphidicola subsp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3FGV5_9BURK 805 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Burkholderia ambifaria AMMD hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q458U9_9BURK 805 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Burkholderia cenocepacia AU 1054 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4LR65_9BURK 805 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Burkholderia cenocepacia HI2424 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9ZFR4_BURCE 621 Principal sigma factor Burkholderia cepacia hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q62DT2_BURMA 680 RNA polymerase sigma factor RpoD Burkholderia mallei hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q62MV5_BURMA 482 RNA polymerase sigma factor RpoD, putative Burkholderia mallei hit 1 n n Q2T2N0_BURTH Burkholderia thailandensis E264 superfamily:SSF48329, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
Q3JKB2_BURP1 800 RNA polymerase sigma factor RpoD Burkholderia pseudomallei hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3JXG2_BURP1 482 RNA polymerase sigma factor Burkholderia pseudomallei hit 1 n n Q2T2N0_BURTH Burkholderia thailandensis E264 HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q63JG1_BURPS 680 RNA polymerase sigma factor RpoD Burkholderia pseudomallei hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q63YT6_BURPS 482 RNA polymerase sigma factor Burkholderia pseudomallei hit 1 n y Q2T2N0_BURTH Burkholderia thailandensis E264 superfamily:SSF48329, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
Q393Q1_BURS3 808 Sigma 70 (RpoD) Burkholderia sp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2T2N0_BURTH 483 RNA polymerase sigma factor RpoD Burkholderia thailandensis E264 hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q2T7M8_BURTH 800 RNA polymerase sigma factor RpoD Burkholderia thailandensis E264 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4B8P1_BURVI 809 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Burkholderia vietnamiensis G4 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2ZE52_CALSA 411 Sigma-70 factor Caldicellulosiruptor saccharolyticus DSM 8903 hit 1 y n superfamily:SSF88946, HMMPfam:PF03979, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4HEV2_CAMCO 621 RNA polymerase sigma factor RpoD Campylobacter coli RM2228 hit 1 n n Q4HMM6_CAMLA Campylobacter lari RM2100 HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O52921_CAMJE 622 Sigma 70 Campylobacter jejuni hit 1 n n Q4HMM6_CAMLA Campylobacter lari RM2100 HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5HUG1_CAMJR 622 RNA polymerase sigma factor RpoD Campylobacter jejuni hit 1 n y Q4HMM6_CAMLA Campylobacter lari RM2100 HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9PNT9_CAMJE 622 RNA polymerase sigma factor (Sigma-70) Campylobacter jejuni hit 1 n y Q4HMM6_CAMLA Campylobacter lari RM2100 HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4HMM6_CAMLA 625 RNA polymerase sigma factor RpoD Campylobacter lari RM2100 hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4HQG2_CAMUP 619 RNA polymerase sigma factor RpoD Campylobacter upsaliensis RM3195 hit 1 n n Q4HMM6_CAMLA Campylobacter lari RM2100 HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3AEW8_CARHZ 370 RNA polymerase sigma factor RpoD Carboxydothermus hydrogenoformans hit 1 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_CAUCR 652 RNA polymerase sigma factor rpoD (Sigma-70) Caulobacter crescentus hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_CHLMU 571 RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A) (Sigma-66) Chlamydia muridarum hit 1 n n Q821E0_CHLCV Chlamydophila caviae HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_CHLPN 572 RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A) (Sigma-66) Chlamydia pneumoniae hit 2 y n Q821E0_CHLCV Chlamydophila caviae HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q59302_CHLPS 571 Major sigma factor Chlamydia psittaci hit 2 y n Q821E0_CHLCV Chlamydophila caviae HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3KL80_CHLTA 571 RpoD Chlamydia trachomatis hit 2 y n Q821E0_CHLCV Chlamydophila caviae HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
RPOD_CHLTR 571 RNA polymerase sigma factor rpoD (Sigma-70) (Sigma-A) (Sigma-66) Chlamydia trachomatis hit 2 n y Q821E0_CHLCV Chlamydophila caviae HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q5L4N8_CHLAB 571 Major sigma factor Chlamydophila abortus hit 2 y n Q821E0_CHLCV Chlamydophila caviae HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q821E0_CHLCV 572 RNA polymerase sigma factor, sigma-70 family Chlamydophila caviae hit 2 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
P71106_CHLAU 346 SigB Chloroflexus aurantiacus hit 1 n n Q3DWL2_CHLAU Chloroflexus aurantiacus J-10-fl superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.60, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
P77840_CHLAU 343 SigA Chloroflexus aurantiacus hit 1 n n Q3E067_CHLAU Chloroflexus aurantiacus J-10-fl HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
P77841_CHLAU 312 SigC Chloroflexus aurantiacus hit 1 n n Q3DXP2_CHLAU Chloroflexus aurantiacus J-10-fl superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
P77842_CHLAU 398 SigD Chloroflexus aurantiacus hit 1 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3DWL2_CHLAU 360 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Chloroflexus aurantiacus J-10-fl hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.60, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q3DXP2_CHLAU 313 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Chloroflexus aurantiacus J-10-fl hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q3DZM3_CHLAU 398 Sigma-70 region 1.2 Chloroflexus aurantiacus J-10-fl hit 1 n n P77842_CHLAU Chloroflexus aurantiacus HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3E067_CHLAU 381 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Chloroflexus aurantiacus J-10-fl hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3E402_CHLAU 345 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Chloroflexus aurantiacus J-10-fl hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q7NRL8_CHRVO 643 RNA polymerase sigma factor RpoD Chromobacterium violaceum hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7NRU8_CHRVO 316 RNA sigma factor RpoS Chromobacterium violaceum hit 1 y n HMMTigr:TIGR02394, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2WTM8_CLOBE 376 Sigma-70 factor Clostridium beijerincki NCIMB 8052 hit 1 n n Q2ZE52_CALSA Caldicellulosiruptor saccharolyticus DSM 8903 superfamily:SSF88946, HMMPfam:PF03979, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q93RN2_CLOPE 366 RNA polymerase major sigma factor Clostridium perfringens hit 1 n n Q2ZE52_CALSA Caldicellulosiruptor saccharolyticus DSM 8903 HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q892T0_CLOTE 366 RNA polymerase sigma factor rpoD Clostridium tetani hit 1 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q896X6_CLOTE 282 RNA polymerase sigma factor rpoD Clostridium tetani hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4CEG0_CLOTM 358 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Clostridium thermocellum ATCC 27405 hit 1 n n Q2ZE52_CALSA Caldicellulosiruptor saccharolyticus DSM 8903 HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q47W39_COLP3 616 RNA polymerase sigma-70 factor Colwellia psychrerythraea hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9AGV7_CORAM 467 RNA polymerase major sigma subunit Corynebacterium ammoniagenes hit 2 y n Q6NGU4_CORDI Corynebacterium diphtheriae superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6NGU4_CORDI 502 RNA polymerase sigma factor Corynebacterium diphtheriae hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPSB_CORDI 329 RNA polymerase sigma factor sigB Corynebacterium diphtheriae hit 2 y n Q4JV99_CORJK Corynebacterium jeikeium superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8FPG7_COREF 333 RNA polymerase sigma factor Corynebacterium efficiens hit 2 y n Q4JV99_CORJK Corynebacterium jeikeium superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q8FPH4_COREF 506 RNA polymerase sigma factor Corynebacterium efficiens hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q45302_CORGL 497 SigA sigma factor Corynebacterium glutamicum hit 1 n y Q8FPH4_COREF Corynebacterium efficiens superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q6M4B0_CORGL 494 RNA POLYMERASE SIGMA 70 FACTOR Corynebacterium glutamicum hit 1 n y Q8FPH4_COREF Corynebacterium efficiens superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q79VF3_CORGL 331 DNA-directed RNA polymerase sigma subunits (Sigma70/sigma32) (SigB) (RNA POLYMERASE SIGMA FACTOR) (SigB sigma factor) Corynebacterium glutamicum hit 2 y n Q4JV99_CORJK Corynebacterium jeikeium superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q8NPA3_CORGL 498 RNA polymerase sigma factor Corynebacterium glutamicum hit 1 n n Q8FPH4_COREF Corynebacterium efficiens superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4JV99_CORJK 343 RNA polymerase sigma factor B Corynebacterium jeikeium hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q4JVA6_CORJK 544 RNA polymerase sigma factor A Corynebacterium jeikeium hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q83BB6_COXBU 698 RNA polymerase sigma factor RpoD Coxiella burnetii hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4BWZ3_CROWT 374 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Crocosphaera watsonii hit 2 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4BYC5_CROWT 328 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Crocosphaera watsonii hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q4C529_CROWT 318 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Crocosphaera watsonii hit 2 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q4C7J7_CROWT 414 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Crocosphaera watsonii hit 2 y n Q7U5C4_SYNPX Synechococcus sp. superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4C8R1_CROWT 297 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Crocosphaera watsonii hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
CMK044C_1 721 sigma subunit for chloroplast RNA polymerase, precursor Cyanidioschyzon merolae hit 1 y n Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
CMR165C_1 649 sigma subunit for chloroplast RNA polymerase Cyanidioschyzon merolae hit 1 y n Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
Q39515_CYACA 591 Chloroplast RNA polymerase sigma subunit Cyanidium caldarium hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9ZTL1_CYACA 589 RNA polymerase sigma factor Cyanidium caldarium hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8S9C8_CYAPA 427 RNA polymerase sigma factor Cyanophora paradoxa hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8S9C9_CYAPA 431 RNA polymerase sigma factor Cyanophora paradoxa hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q3Z904_DEHE1 520 RNA polymerase sigma factor RpoD Dehalococcoides ethenogenes hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3ZZU9_DEHSC 520 RNA polymerase, sigma factor Dehalococcoides sp. hit 1 n n Q3Z904_DEHE1 Dehalococcoides ethenogenes superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4HAY4_9DEIO 532 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Deinococcus geothermalis DSM 11300 hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6AK94_DESPS 447 Probable RNA polymerase sigma factor (RpoD) Desulfotalea psychrophila hit 1 y n HMMPfam:PF03979, superfamily:SSF48329, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6AQ51_DESPS 534 Probable RNA polymerase sigma factor (RpoD) Desulfotalea psychrophila hit 1 y n superfamily:SSF48329, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q30ZP7_DESDG 589 Sigma-70 factor Desulfovibrio desulfuricans hit 1 n n Q72B50_DESVH Desulfovibrio vulgaris HMMPfam:PF03979, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q72B50_DESVH 590 RNA polymerase sigma-70 factor Desulfovibrio vulgaris hit 2 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3YSE6_EHRCJ 622 RNA polymerase sigma factor rpoD Ehrlichia canis hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q40K41_EHRCH 622 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Ehrlichia chaffeensis str. Sapulpa hit 1 n n Q3YSE6_EHRCJ Ehrlichia canis HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5FHI1_EHRRG 622 RNA polymerase sigma factor rpoD Ehrlichia ruminantium hit 1 n n Q3YSE6_EHRCJ Ehrlichia canis HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q5HBJ8_EHRRW 622 RNA polymerase sigma-70 factor (RNA polymerase sigma factor rpoD) Ehrlichia ruminantium hit 1 n y Q3YSE6_EHRCJ Ehrlichia canis HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
RPOD_ENTFA 368 RNA polymerase sigma factor rpoD (Sigma-42) Enterococcus faecalis hit 1 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6D9D6_ERWCT 611 RNA polymerase sigma-70 factor Erwinia carotovora subsp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, superfamily:SSF48329, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2NAR6_9SPHN 675 RNA polymerase sigma-70 factor Erythrobacter litoralis HTCC2594 hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q59371_ECOLI 603 RNA polymerase sigma-subunit Escherichia coli hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_ECOLI 613 RNA polymerase sigma factor rpoD (Sigma-70) Escherichia coli hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q8XAN5_ECO57 613 RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures (RNA polymerase sigma 70 factor RpoD) Escherichia coli O157:H7 hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q8FDG1_ECOL6 246 RpoD protein Escherichia coli O6 hit 1 n y Q3S130_RALME Ralstonia metallidurans superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2M9D8_ECOLI 613 RNA polymerase, sigma 70 (Sigma D) factor Escherichia coli W3110 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q41FR4_9BACI 361 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Exiguobacterium sp. hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5NG24_FRATT 577 RNA polymerase sigma-70 factor Francisella tularensis subsp. hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3VYI8_9ACTO 423 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Frankia sp. hit 2 y n Q437Y7_9ACTO Frankia sp. HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3WBS5_9ACTO 409 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Frankia sp. hit 2 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3WGE4_9ACTO 400 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Frankia sp. hit 2 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q437Y7_9ACTO 465 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Frankia sp. hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q43B39_9ACTO 409 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Frankia sp. hit 2 n y Q3WBS5_9ACTO Frankia sp. HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6TE13_9ACTO 409 Essential primary sigma 70 factor Frankia sp. hit 2 y n Q3WBS5_9ACTO Frankia sp. HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8GGT8_9ACTO 385 Primary sigma 70 transcriptional factor Frankia sp. hit 2 y n Q437Y7_9ACTO Frankia sp. superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7P572_FUSNV 340 RNA polymerase sigma factor rpoD Fusobacterium nucleatum subsp. hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8RE13_FUSNN 331 RNA polymerase sigma factor rpoD Fusobacterium nucleatum subsp. hit 1 n n Q7P572_FUSNV Fusobacterium nucleatum subsp. HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5KX19_GEOKA 375 DNA-directed RNA polymerase major sigma-43 factor (Sigma-A) Geobacillus kaustophilus hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q39YN6_GEOMG 579 RNA polymerase sigma factor RpoD-like Geobacter metallireducens hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7NCH1_GLOVI 305 RNA polymerase sigma factor Gloeobacter violaceus hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7ND77_GLOVI 344 Group2 RNA polymerase sigma factor Gloeobacter violaceus hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7NEW6_GLOVI 362 Group2 RNA polymerase sigma factor Gloeobacter violaceus hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7NHG5_GLOVI 400 Principal RNA polymerase sigma factor Gloeobacter violaceus hit 2 y n Q7U5C4_SYNPX Synechococcus sp. superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7NKZ2_GLOVI 350 Group2 RNA polymerase sigma factor Gloeobacter violaceus hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7NP54_GLOVI 356 RNA polymerase sigma factor Gloeobacter violaceus hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q5FU55_GLUOX 652 RNA polymerase sigma factor RpoD Gluconobacter oxydans hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8S9D0_GUITH 490 RNA polymerase sigma factor Guillardia theta hit 2 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q98RZ3_GUITH 460 RNA-polymerase sigma factor Guillardia theta hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7VN82_HAEDU 613 RNA polymerase sigma factor Haemophilus ducreyi hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4QN15_HAEI8 623 RNA polymerase sigma factor RpoD Haemophilus influenzae hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_HAEIN 629 RNA polymerase sigma factor rpoD (Sigma-70) Haemophilus influenzae hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2S8V3_9GAMM 639 RNA polymerase sigma-70 factor RpoD Hahella chejuensis KCTC 2396 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7VIQ9_HELHP 623 RNA polymerase sigma 70 factor Helicobacter hepaticus hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O32637_HELPY 685 Sigma 80 Helicobacter pylori hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O33992_HELPY 680 RNA polymerase principal sigma factor RpoD Helicobacter pylori hit 1 n n O32637_HELPY Helicobacter pylori HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9S1D0_HELPY 675 RNA polymerase sigma 70 Helicobacter pylori hit 1 n n O32637_HELPY Helicobacter pylori HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q40AR5_9RHOB 668 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Jannaschia sp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q40XI5_KINRA 502 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Kineococcus radiotolerans SRS30216 hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_LACLA 386 RNA polymerase sigma factor rpoD (Sigma-42) Lactococcus lactis subsp. hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_LACLC 364 RNA polymerase sigma factor rpoD (Sigma-42) (Fragment) Lactococcus lactis subsp. hit 1 n y RPOD_LACLA Lactococcus lactis subsp. HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
P77890_LEGPN 620 LprpoD Legionella pneumophila hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5WU85_LEGPL 621 RNA polymerase sigma factor rpoD (Sigma-70) Legionella pneumophila hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5X2S7_LEGPA 621 RNA polymerase sigma factor rpoD (Sigma-70) Legionella pneumophila hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5ZT04_LEGPH 623 RNA polymerase sigma 70 factor (RpoD) Legionella pneumophila subsp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6AFF9_LEIXX 440 RNA polymerase, sigma-70 family factor Leifsonia xyli subsp. hit 1 y n superfamily:SSF48329, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
RPOD_LISIN 374 RNA polymerase sigma factor rpoD (Sigma-43) Listeria innocua hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_LISMO 374 RNA polymerase sigma factor rpoD (Sigma-43) Listeria monocytogenes hit 1 n y RPSD2_BACSP Bacillus sp HMMPfam:PF03979, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q71ZL6_LISMF 374 RNA polymerase sigma factor RpoD Listeria monocytogenes serotype 4b hit 1 n y RPSD2_BACSP Bacillus sp HMMPfam:PF03979, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q4ETW0_LISMO 374 RNA polymerase sigma factor RpoD Listeria monocytogenes str. 1/2a F6854 hit 1 n y RPSD2_BACSP Bacillus sp HMMPfam:PF03979, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q4EIR3_LISMO 374 RNA polymerase sigma factor RpoD Listeria monocytogenes str. 4b H7858 hit 1 n n RPSD2_BACSP Bacillus sp HMMPfam:PF03979, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q3XTG3_9PROT 683 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Magnetococcus sp. hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2W9H4_MAGSA 679 DNA-directed RNA polymerase Magnetospirillum magneticum AMB-1 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q65RP3_MANSM 628 RpoD protein Mannheimia succiniciproducens hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, superfamily:SSF48329, HMMPfam:PF00140, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3WKJ1_9RHIZ 668 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Mesorhizobium sp. hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
P94906_MICAE 376 RpoD2 sigma factor Microcystis aeruginosa hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_MICAE 416 RNA polymerase sigma factor rpoD1 Microcystis aeruginosa hit 2 y n Q7U5C4_SYNPX Synechococcus sp. superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q2RKT5_MOOTH 361 Sigma 38 (RpoS) Moorella thermoacetica ATCC 39073 hit 1 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q59502_MYCBO 528 Sigma factor Mycobacterium bovis hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q60158_MYCBO 528 Sigma factor Mycobacterium bovis hit 1 n y Q59502_MYCBO Mycobacterium bovis superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7TY20_MYCBO 323 RNA POLYMERASE SIGMA FACTOR SIGB Mycobacterium bovis hit 1 n n P77906_MYCTU Mycobacterium tuberculosis HMMPfam:PF00140, superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
RPOD_MYCBO 528 RNA polymerase sigma factor rpoD (Sigma-A) Mycobacterium bovis hit 1 n y Q59502_MYCBO Mycobacterium bovis superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q73W34_MYCPA 332 SigB Mycobacterium paratuberculosis hit 1 n n P77906_MYCTU Mycobacterium tuberculosis HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q73W40_MYCPA 509 SigA Mycobacterium paratuberculosis hit 1 n n Q59502_MYCBO Mycobacterium bovis superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q59552_MYCSM 466 Sigma factor MysA Mycobacterium smegmatis hit 1 n n Q59502_MYCBO Mycobacterium bovis superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q59553_MYCSM 319 Sigma factor MysB Mycobacterium smegmatis hit 1 n n P77906_MYCTU Mycobacterium tuberculosis HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
P77906_MYCTU 345 Sigma factor MytB Mycobacterium tuberculosis hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q59563_MYCTU 323 Sigma factor MysB (RNA POLYMERASE SIGMA FACTOR SIGB) (RNA polymerase principal sigma factor SigB) Mycobacterium tuberculosis hit 1 n y P77906_MYCTU Mycobacterium tuberculosis HMMPfam:PF00140, superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
RPOD_MYCTU 528 RNA polymerase sigma factor rpoD (Sigma-A) Mycobacterium tuberculosis hit 1 n n Q59502_MYCBO Mycobacterium bovis superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
Q7NB90_MYCGA 644 RpoD Mycoplasma gallisepticum hit 1 y n superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q8EUT4_MYCPE 427 RNA polymerase sigma factor Mycoplasma penetrans hit 1 y n superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_MYXXA 708 RNA polymerase sigma factor rpoD (Sigma-80) Myxococcus xanthus hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5F805_NEIG1 642 Putative RNA polymerase sigma factor Neisseria gonorrhoeae hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
RPOD_NEIGO 642 RNA polymerase sigma factor rpoD (Sigma-70) Neisseria gonorrhoeae hit 1 n y Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9JTK6_NEIMA 642 RNA polymerase sigma factor Neisseria meningitidis serogroup A hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9JYK7_NEIMB 642 RNA polymerase sigma factor RpoD Neisseria meningitidis serogroup B hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9SLX3_TOBAC 502 Sigma factor Nicotiana tabacum hit 1 y n superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, Gene3D:G3D.1.10.10.10, FPrintScan:PR00046
Q9SLX4_TOBAC 508 Sigma factor Nicotiana tabacum hit 1 y n superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, Gene3D:G3D.1.10.10.10, FPrintScan:PR00046
Q3PY86_NITHA 717 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Nitrobacter hamburgensis X14 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3SPU8_NITWN 717 RpoD Nitrobacter winogradskyi hit 2 y n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3J9H0_NITOC 579 RpoD Nitrosococcus oceani hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q5YT68_NOCFA 322 RNA polymerase sigma factor Nocardia farcinica hit 1 n n P77906_MYCTU Mycobacterium tuberculosis superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
Q5YT84_NOCFA 454 RNA polymerase sigma factor Nocardia farcinica hit 1 n n Q59502_MYCBO Mycobacterium bovis superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3GV47_9ACTO 495 Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Nocardioides sp. hit 2 y n HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O30967_NOSPU 321 Group 2 alternative sigma factor Nostoc punctiforme hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q9L4T2_NOSPU 389 Primary vegetative sigma factor Nostoc punctiforme hit 2 y n Q7U5C4_SYNPX Synechococcus sp. superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q37RV8_SPHAR 667 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Novosphingobium aromaticivorans DSM 12444 hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4A3X8_OENOE 458 RpoD protein Oenococcus oeni hit 1 y n HMMPfam:PF03979, superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
O48655_ORYSA 519 Plastid RNA polymerase sigma factor Oryza sativa hit 1 y n superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q7EY07_ORYSA 342 Putative plastid RNA polymerase sigma factor Oryza sativa hit 1 n y O48655_ORYSA Oryza sativa superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q7EY08_ORYSA 388 Putative plastid RNA polymerase sigma factor Oryza sativa hit 1 n y O48655_ORYSA Oryza sativa superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q84JN3_ORYSA 500 Plastid sigma factor SIG5 Oryza sativa hit 1 y n superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, FPrintScan:PR00046
2989.m00122 760 |||Similar to AB010696 sigma-like factor|o_sativa|chr_5|OJ1007H05|2989 Oryza sativa japonica cultivar-group hit 1 n n Q84JN3_ORYSA Oryza sativa Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
7200.m00090 520 |||Sigma-70 region 2, putative|o_sativa|chr_8|OJ9990_A01|7200 Oryza sativa japonica cultivar-group hit 1 n y O48655_ORYSA Oryza sativa superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
Q6MEU8_PARUW 554 Probable transcription initiation factor sigma 70 Parachlamydia sp. hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3PJZ2_PARDE 664 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70 region 1.2 Paracoccus denitrificans PD1222 hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q9CLI8_PASMU 622 RpoD Pasteurella multocida hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4FPR1_PELUB 595 RNA polymerase sigma factor Pelagibacter ubique hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3A143_PELCD 588 Sigma 38 (RpoS) Pelobacter carbinolicus hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q3FYF4_9DELT 582 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70 region 1.2 Pelobacter propionicus DSM 2379 hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q6LV14_PHOPR 612 Putative DNA-directed RNA polymerase, sigmasubunit Photobacterium profundum hit 1 n n Q3S130_RALME Ralstonia metallidurans HMMPfam:PF03979, HMMPfam:PF00140, HMMPfam:PF04546, superfamily:SSF88946, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
AB046872 579 FrameD:1:1740:1 pp(03/04):CSI:AB046872: PP_SD_110.Singlet not annotated Physcomitrella patens Physcomitrella patens hit 2 n y Q9AYR7_PHYPA Physcomitrella patens Gene3D:G3D.1.10.601.10, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
AB059354 677 FrameD:1:2034:1 pp(03/04):CSI:AB059354: PP_SD_111.Singlet not annotated Physcomitrella patens Physcomitrella patens hit 1 n y Q93V67_PHYPA Physcomitrella patens Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
BAB21618 579 Physcomitrella patens query 1 n y Q9AYR7_PHYPA Physcomitrella patens superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
BAB62007 677 Physcomitrella patens query 1 n y Q93V67_PHYPA Physcomitrella patens HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
BAD80742 632 Physcomitrella patens query 1 n y Q5NTH1_PHYPA Physcomitrella patens superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
PP_5770_C1 414 FrameD:50:1294:-1 pp(03/04):CON:PP_5770_C1:**: Homolog of (AB046872) PpSIG2 [Physcomitrella patens] Physcomitrella patens hit 2 y n HMMPfam:PF00140, Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
PP_6995_C2 373 FrameD:1:1124:3 pp(03/04):CON:PP_6995_C2:***: Q9ZNX9 Sigma-like factor precursor (RNA polymerase sigma subunit SigE) Physcomitrella patens hit 1 n y Q5NTH1_PHYPA Physcomitrella patens superfamily:SSF88946, Gene3D:G3D.1.10.601.10, HMMPfam:PF04542, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
PP_SD_110_C1 579 FrameD:157:1896:-1 pp(03/04):CON:PP_SD_110_C1:****: Physcomitrella patens Sig2 mRNA for PpSIG2, complete cds Physcomitrella patens hit 2 n y Q9AYR7_PHYPA Physcomitrella patens Gene3D:G3D.1.10.601.10, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ScanRegExp:PS00716, FPrintScan:PR00046
PP_SD_111_C1 677 FrameD:302:2335:2 pp(03/04):CON:PP_SD_111_C1:****: Physcomitrella patens Sig1 mRNA for PpSIG1, complete cds Physcomitrella patens hit 1 n y Q93V67_PHYPA Physcomitrella patens Gene3D:G3D.1.10.601.10, superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ScanRegExp:PS00715, superfamily:SSF88659, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
Q5NTH1_PHYPA 632 Plastid sigma factor PpSIG5 Physcomitrella patens hit 1 y n superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q93V67_PHYPA 677 PpSIG1 Physcomitrella patens hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q9AYR7_PHYPA 579 PpSIG2 Physcomitrella patens hit 2 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q4AQW1_9BURK 808 Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70, non-essential region:Sigma-70, non-essential region Polaromonas sp. hit 1 y n HMMPfam:PF03979, HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04546, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q317U4_PROM9 339 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 n n Q7V3U4_PROMM Prochlorococcus marinus HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q318B2_PROM9 344 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 y n HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, FPrintScan:PR00046
Q319K0_PROM9 313 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 y n HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q31C37_PROM9 393 Sigma-70 factor Prochlorococcus marinus hit 2 y n Q7U5C4_SYNPX Synechococcus sp. HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q46GS6_PROMT 420 Sigma-70 factor Prochlorococcus marinus hit 2 y n Q7U5C4_SYNPX Synechococcus sp. superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q46I83_PROMT 340 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 n n Q7V3U4_PROMM Prochlorococcus marinus superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q46II1_PROMT 335 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 y n HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q46JI1_PROMT 313 DNA-directed RNA polymerase sigma subunit (Sigma70/sigma32) Prochlorococcus marinus hit 1 n n Q319K0_PROM9 Prochlorococcus marinus superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7V3U4_PROMM 344 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7V3X0_PROMM 376 Putative type II alternative RNA polymerase sigma factor Prochlorococcus marinus hit 1 y n superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, FPrintScan:PR01590, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q7V698_PROMM 461 Putative principal RNA polymerase sigma factor Prochlorococcus marinus hit 2 y n Q7U5C4_SYNPX Synechococcus sp. superfamily:SSF88946, HMMPfam:PF00140, HMMTigr:TIGR02393, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, Gene3D:G3D.1.10.10.10, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7V6S8_PROMM 320 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 n n Q3ANG0_SYNSC Synechococcus sp. HMMPfam:PF00140, superfamily:SSF88946, HMMPfam:PF04542, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, FPrintScan:PR00046
Q7V8J9_PROMM 313 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 1 n n Q319K0_PROM9 Prochlorococcus marinus superfamily:SSF88946, HMMPfam:PF00140, HMMPfam:PF04542, ProfileScan:PS00715, HMMPfam:PF04539, superfamily:SSF88659, HMMPfam:PF04545, ProfileScan:PS00716, FPrintScan:PR00046
Q7V934_PROMM 335 Type II alternative RNA polymerase sigma factor, sigma-70 family Prochlorococcus marinus hit 2 y n Q3ANG0_SYNSC Synechococcus sp. HMMPfam:PF00140, superfamily:SSF88946,