PlanTAP Family TR019

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main family MED6
sub family
accession number TR019
category TR
citation(s) Gim et al. (2001), Guglielmi et al. (2004), Lee and Kim (1998)
number of members 44
number of non-redundant members 34
number of members in trees 34
number of queries 1
number of clusters 1
consensus domain(s) IPR007018
last modified 2006-08-02 16:31:40.590638
 

1 contributing PlanTAP Family Cluster(s) with phylogenetic tree(s):
TR019_481
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member species taxonomic profile

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in family clusters
is a? in tree? redundant?
graphical view of the family members' domain structures
 

44 members shown

member_name length description species is a in #clusters in tree redundant representative repr. species domains
Q7Q107_ANOGA 244 ENSANGP00000011842 (Fragment) Anopheles gambiae str. PEST hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
At3g21350.1 257 68410.m02446 expressed protein contains similarity to RNA polymerase transcriptional regulation mediator GB:AAC26869 from [Homo sapiens] Arabidopsis thaliana hit 1 n y Q9LIG1_ARATH Arabidopsis thaliana HMMPanther:PTHR13104:SF4, HMMPanther:PTHR13104, HMMPfam:PF04934
Q9LIG1_ARATH 257 Similarity to RNA polymerase transcriptional regulation mediator (Hypothetical protein At3g21350) Arabidopsis thaliana hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q75EY3_ASHGO 235 AAL055Cp Ashbya gossypii hit 1 y n HMMPfam:PF04934, HMMPanther:PTHR13104
Q4WDH9_ASPFU 324 RNA polymerase II transcription mediator complex subunit (Med6), putative Aspergillus fumigatus hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q5AYT1_EMENI 346 Hypothetical protein Aspergillus nidulans FGSC A4 hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q2U9E7_ASPOR 328 Predicted protein Aspergillus oryzae hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q3SZY9_BOVIN 246 Hypothetical protein MGC127713 Bos taurus hit 1 y n HMMPfam:PF04934
Q6IQ63_BRARE 254 Zgc:86933 Brachydanio rerio hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
O18534_CAEEL 246 RNA polymerase transcriptional regulation mediator Caenorhabditis elegans hit 1 n y Q9N337_CAEEL Caenorhabditis elegans HMMPanther:PTHR13104, HMMPfam:PF04934
Q9N337_CAEEL 250 Mediator protein 6 Caenorhabditis elegans hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q5A2Z1_CANAL 263 Hypothetical protein MED6 Candida albicans SC5314 hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q6FW12_CANGA 302 Similar to sp|P38782 Saccharomyces cerevisiae YHR058c MED6 Candida glabrata hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q5KPC2_CRYNE 357 Expressed protein Cryptococcus neoformans hit 1 n y Q560B9_CRYNE Cryptococcus neoformans var. HMMPanther:PTHR13104, HMMPfam:PF04934
Q560B9_CRYNE 357 Hypothetical protein Cryptococcus neoformans var. hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
CMT286C_1 192 hypothetical protein, conserved Cyanidioschyzon merolae hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q6BIH7_DEBHA 257 Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Debaryomyces hansenii hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q54PN3_DICDI 267 Hypothetical protein Dictyostelium discoideum hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q8MSX2_DROME 249 LD15729p (CG9473-PA, isoform A) (Cg9473-pb, isoform b) (RE38674p) Drosophila melanogaster hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q8SWN5_ENCCU 177 Hypothetical protein ECU01_0500 Encephalitozoon cuniculi hit 1 y n HMMPanther:PTHR13104
Q4I9K8_GIBZE 317 Hypothetical protein Gibberella zeae hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
MED6_HUMAN 246 RNA polymerase transcriptional regulation mediator, subunit 6 homolog (Activator-recruited cofactor 33 kDa component) (ARC33) (NY-REN-28 antigen) Homo sapiens hit 1 y n HMMPanther:PTHR13104:SF7, HMMPanther:PTHR13104, HMMPfam:PF04934
Q53FE3_HUMAN 246 Mediator of RNA polymerase II transcription, subunit 6 homolog (Fragment) Homo sapiens hit 1 n y MED6_HUMAN Homo sapiens HMMPanther:PTHR13104, HMMPfam:PF04934
Q53HJ3_HUMAN 246 Mediator of RNA polymerase II transcription, subunit 6 homolog (Fragment) Homo sapiens hit 1 n y MED6_HUMAN Homo sapiens HMMPanther:PTHR13104, HMMPfam:PF04934
Q6FHQ4_HUMAN 246 MED6 protein (Mediator of RNA polymerase II transcription, subunit 6 homolog) (Yeast) (Fragment) Homo sapiens hit 1 n y MED6_HUMAN Homo sapiens HMMPanther:PTHR13104:SF7, HMMPanther:PTHR13104, HMMPfam:PF04934
Q6CTT6_KLULA 268 Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y- 1140 of Kluyveromyces lactis Kluyveromyces lactis hit 1 y n HMMPfam:PF04934, HMMPanther:PTHR13104
Q9GKV0_MACFA 195 Hypothetical protein Macaca fascicularis hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q3TAK5_MOUSE 220 Activated spleen cDNA, RIKEN full-length enriched library, clone:F830011B05 product:mediator of RNA polymerase II transcription, subunit 6 homolog (yeast), full insert sequence Mus musculus hit 1 y n HMMPfam:PF04934
Q8BTP9_MOUSE 162 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430039H18 product:RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR homolog (Fragment) Mus musculus hit 1 n y Q3TAK5_MOUSE Mus musculus HMMPanther:PTHR13104, HMMPfam:PF04934
Q921D4_MOUSE 195 Mediator of RNA polymerase II transcription, subunit 6 homolog Mus musculus hit 1 n y Q3TAK5_MOUSE Mus musculus HMMPanther:PTHR13104, HMMPfam:PF04934
Q9HED8_NEUCR 360 Related to RNA polymerase II transcriptional regulation mediator MED6 Neurospora crassa hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q69TG3_ORYSA 242 Putative RNA polymerase transcriptional regulation mediator Oryza sativa hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
3772.m00144 209 |||hypothetical protein|o_sativa|chr_6|OSJNBb0024N18|3772 Oryza sativa japonica cultivar-group hit 1 n y Q69TG3_ORYSA Oryza sativa HMMPfam:PF04934, HMMPanther:PTHR13104:SF4, HMMPanther:PTHR13104
BAD35844 242 Oryza sativa japonica cultivar-group query 1 n y Q69TG3_ORYSA Oryza sativa HMMPanther:PTHR13104, HMMPfam:PF04934
PP_5852_C1 212 ESTScan:1:636:-1 pp(03/04):CON:PP_5852_C1:**: Homolog of (68416.m02696 RNA polymerase transcriptional regulation mediator-related contains weak similarity to RNA polymerase transcriptional regulation mediator, subunit 6 homolog (Activator-recruited cofactor 33 kDa component) (ARC33) (NY-REN-28 antigen) Swiss-Prot:O75586) [Homo sapiens]; Physcomitrella patens hit 1 y n HMMPanther:PTHR13104:SF4, HMMPanther:PTHR13104, HMMPfam:PF04934
PP_5852_C2 255 ESTScan:157:923:1 pp(03/04):CON:PP_5852_C2:**: Homolog of (68416.m02696 RNA polymerase transcriptional regulation mediator-related contains weak similarity to RNA polymerase transcriptional regulation mediator, subunit 6 homolog (Activator-recruited cofactor 33 kDa component) (ARC33) (NY-REN-28 antigen) Swiss-Prot:O75586) [Homo sapiens]; Physcomitrella patens hit 1 y n HMMPanther:PTHR13104:SF4, HMMPanther:PTHR13104, HMMPfam:PF04934
MED6_PONPY 246 RNA polymerase transcriptional regulation mediator, subunit 6 homolog Pongo pygmaeus hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
MED6_YEAST 295 RNA polymerase II mediator complex subunit 6 (RNA polymerase II transcriptional regulation mediator 6) Saccharomyces cerevisiae hit 1 y n HMMPfam:PF04934, HMMPanther:PTHR13104
Q5C3M1_SCHJA 216 SJCHGC07209 protein (Fragment) Schistosoma japonicum hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
MED6_SCHPO 216 RNA polymerase II mediator complex subunit 6 (RNA polymerase II mediator complex protein pmc5) Schizosaccharomyces pombe hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q4RED3_TETNG 265 Chromosome 10 SCAF15123, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n HMMPfam:PF04934, HMMPanther:PTHR13104
tp108727 196 Thalassiosira pseudonana hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q4PHA6_USTMA 254 Hypothetical protein Ustilago maydis 521 hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934
Q6C3T0_YARLI 227 Similar to KLLA0C10186g Kluyveromyces lactis Yarrowia lipolytica hit 1 y n HMMPanther:PTHR13104, HMMPfam:PF04934

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