PlanTAP Family TF042

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main family MYB
sub family LHY-CCA1-like
accession number TF042
category TF
citation(s) Ito (2005), Jin and Martin (1999), Klempnauer and Sippel (1987), Martin and Paz-Ares (1997), Mizoguchi et al. (2002), Wang and Tobin (1998)
number of members 32
number of non-redundant members 18
number of members in trees 18
number of queries 1
number of clusters 1
consensus domain(s) IPR001005, IPR006447, IPR009057, IPR012287
last modified 2006-08-02 16:31:40.590638
 

1 contributing PlanTAP Family Cluster(s) with phylogenetic tree(s):
TF042_232
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member species taxonomic profile

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in family clusters
is a? in tree? redundant?
graphical view of the family members' domain structures
 

32 members shown

member_name length description species is a in #clusters in tree redundant representative repr. species domains
At1g01520.1 287 68408.m00060 myb family transcription factor similar to myb-related protein GI:2505876 from [Arabidopsis thaliana] Arabidopsis thaliana hit 1 n y Q9LMM9_ARATH Arabidopsis thaliana ProfileScan:PS50090, superfamily:SSF46689, HMMTigr:TIGR01557, Gene3D:G3D.1.10.10.60, HMMSmart:SM00717, HMMPfam:PF00249, HMMPanther:PTHR12802:SF3, HMMPanther:PTHR12802
At3g09600.1 298 68410.m01023 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain Arabidopsis thaliana hit 1 n y Q8RWU3_ARATH Arabidopsis thaliana superfamily:SSF46689, ProfileScan:PS50090, HMMTigr:TIGR01557, Gene3D:G3D.1.10.10.60, HMMSmart:SM00717, HMMPfam:PF00249, HMMPanther:PTHR12802, HMMPanther:PTHR12802:SF3
At4g01280.1 285 68411.m00159 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA binding domain Arabidopsis thaliana hit 1 n y Q571Z4_ARATH Arabidopsis thaliana superfamily:SSF46689, ProfileScan:PS50090, HMMTigr:TIGR01557, Gene3D:G3D.1.10.10.60, HMMSmart:SM00717, HMMPfam:PF00249, HMMPanther:PTHR12802:SF3, HMMPanther:PTHR12802
At5g02840.1 293 68412.m07740 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA binding domain Arabidopsis thaliana hit 1 n y Q9LZ01_ARATH Arabidopsis thaliana superfamily:SSF46689, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249, HMMPanther:PTHR12802, HMMPanther:PTHR12802:SF3
At5g02840.2 293 68412.m07741 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA binding domain Arabidopsis thaliana hit 1 n y Q9LZ01_ARATH Arabidopsis thaliana superfamily:SSF46689, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249, HMMPanther:PTHR12802, HMMPanther:PTHR12802:SF3
At5g52660.1 330 68412.m07962 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA-binding domain Arabidopsis thaliana hit 1 n y Q8H0W3_ARATH Arabidopsis thaliana HMMPanther:PTHR12802:SF3, HMMPanther:PTHR12802, superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
At5g52660.2 331 68412.m07963 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA-binding domain Arabidopsis thaliana hit 1 n y Q8H0W3_ARATH Arabidopsis thaliana HMMPanther:PTHR12802:SF3, HMMPanther:PTHR12802, superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
O04605_ARATH 213 A_IG002N01.20 protein Arabidopsis thaliana hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q2V3A6_ARATH 283 Protein At5g02840 Arabidopsis thaliana hit 1 y n superfamily:SSF46689, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q571Z4_ARATH 302 Myb transcription factor LHY-CCA1-like4 Arabidopsis thaliana hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q6QAC9_ARATH 282 Myb transcription factor LHY-CCA1-like5 Arabidopsis thaliana hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q6R0G4_ARATH 293 Myb transcription factor LHY-CCA1-like1 Arabidopsis thaliana hit 1 n y Q9LZ01_ARATH Arabidopsis thaliana superfamily:SSF46689, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q6R0H0_ARATH 287 Myb transcription factor LHY-CCA1-like3 Arabidopsis thaliana hit 1 n y Q9LMM9_ARATH Arabidopsis thaliana superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q8H0W3_ARATH 331 Hypothetical protein At5g52660 (MYB transcription factor) Arabidopsis thaliana hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q8LAP4_ARATH 330 Contains similarity to MYB-related DNA-binding protein (Myb transcription factor LHY-CCA1-like2) Arabidopsis thaliana hit 1 n y Q8H0W3_ARATH Arabidopsis thaliana superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q8RWU3_ARATH 298 Hypothetical protein At3g09600 Arabidopsis thaliana hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q94B26_ARATH 293 Hypothetical protein F9G14_150 (Hypothetical protein At5g02840) Arabidopsis thaliana hit 1 n y Q9LZ01_ARATH Arabidopsis thaliana superfamily:SSF46689, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q9LMM9_ARATH 1284 F22L4.6 protein Arabidopsis thaliana hit 1 y n HMMPfam:PF02826, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q9LTF1_ARATH 334 Similarity to MYB-related DNA-binding protein Arabidopsis thaliana hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q9LZ01_ARATH 307 Hypothetical protein F9G14_150 Arabidopsis thaliana hit 1 y n superfamily:SSF46689, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q9M142_ARATH 285 Putative myb-related DNA-binding protein (MYB transcription factor) Arabidopsis thaliana hit 1 n y Q571Z4_ARATH Arabidopsis thaliana superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q9SF43_ARATH 125 Putative MYB-related protein Arabidopsis thaliana hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q2LMD6_MALDO 323 MYBR5 Malus domestica hit 1 y n Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q5VS69_ORYSA 298 Putative MYB29 protein Oryza sativa hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
Q655R8_ORYSA 166 MYB29 protein Oryza sativa hit 1 y n
Q6EPN5_ORYSA 255 Myb family transcription factor-like Oryza sativa hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, Gene3D:G3D.1.10.10.60, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
1958.m00148 338 |||myb-like DNA-binding domain, SHAQKYF class, putative|o_sativa|chr_6|P0686E06|1958 Oryza sativa japonica cultivar-group hit 1 n y Q655R8_ORYSA Oryza sativa superfamily:SSF46689, ProfileScan:PS50090, HMMTigr:TIGR01557, Gene3D:G3D.1.10.10.60, HMMSmart:SM00717, HMMPfam:PF00249, HMMPanther:PTHR12802, HMMPanther:PTHR12802:SF3
3026.m00035 626 |||Integral membrane protein, putative|o_sativa|chr_6|unknown|3026 Oryza sativa japonica cultivar-group hit 1 y n HMMPfam:PF00892
3476.m00123 340 |||myb-related DNA-binding protein, putative|o_sativa|chr_2|OJ1118_C06|3476 Oryza sativa japonica cultivar-group hit 1 y n superfamily:SSF46689, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
6619.m00175 340 |||myb-related DNA-binding protein, putative|o_sativa|chr_2|P0663F07|6619 Oryza sativa japonica cultivar-group both 1 n y 3476.m00123 Oryza sativa japonica cultivar-group superfamily:SSF46689, HMMTigr:TIGR01557, HMMSmart:SM00717, HMMPfam:PF00249
PP001003074F 212 FrameD:99:734:3 pp(03/04):SIN:PP001003074F:**: Homolog of myb-related DNA-binding protein, putative|o_sativa|chr_2|P0663F07|6619 Physcomitrella patens hit 1 y n
PP001072036R 218 FrameD:81:737:3 pp(03/04):CSI:PP001072036R:**: PP_CL_15170.Singlet Homolog of 68418.m06538 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA-binding domain Physcomitrella patens hit 1 y n superfamily:SSF46689, ProfileScan:PS50090, HMMTigr:TIGR01557, Gene3D:G3D.1.10.10.60, HMMSmart:SM00717, HMMPfam:PF00249, HMMPanther:PTHR12802, HMMPanther:PTHR12802:SF3

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