PlanTAP Family TF040

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main family MADS
sub family MADS type 1
accession number TF040
category TF
citation(s) Nam et al. (2003), Ng and Yanofsky (2001), Parenicova et al. (2003), Riechmann and Meyerowitz (1997), Riese et al. (2005), West and Sharrocks (1999)
number of members 36
number of non-redundant members 21
number of members in trees 21
number of queries 1
number of clusters 1
consensus domain(s) IPR002100
last modified 2006-08-28 13:08:34.158922
 

1 contributing PlanTAP Family Cluster(s) with phylogenetic tree(s):
TF040_538
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member species taxonomic profile

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in family clusters
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graphical view of the family members' domain structures
 

36 members shown

member_name length description species is a in #clusters in tree redundant representative repr. species domains
At1g22130.1 335 68408.m02503 MADS-box protein similar to MADS-box protein (ZAP1) GI:939784 from [Zea mays] Arabidopsis thaliana hit 1 n y Q9LM46_ARATH Arabidopsis thaliana superfamily:SSF55455, HMMSmart:SM00432, ProfileScan:PS50066, ScanRegExp:PS00350, HMMPfam:PF00319, HMMPanther:PTHR11945, HMMPanther:PTHR11945:SF19, FPrintScan:PR00404
Q6NLE9_ARATH 186 At1g77950 Arabidopsis thaliana hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q76K81_ARATH 301 MADS-box protein (Fragment) Arabidopsis thaliana hit 1 n y Q9LM46_ARATH Arabidopsis thaliana HMMPanther:PTHR11945:SF19, HMMPanther:PTHR11945
Q76K85_ARATH 307 MADS-box protein (Fragment) Arabidopsis thaliana hit 1 n y Q7X9H4_ARATH Arabidopsis thaliana ProfileScan:PS50066, HMMSmart:SM00432, HMMPfam:PF00319, superfamily:SSF55455
Q7X9H4_ARATH 332 MADS-box protein AGL66 Arabidopsis thaliana hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q9LM46_ARATH 335 F2E2.20 (MADS-box family protein) Arabidopsis thaliana hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
AY542688 351 FrameD:327:1382:3 pp(03/04):CSI:AY542688: PP_SD_1.Singlet not annotated Physcomitrella patens Physcomitrella patens hit 1 n y Q8L6F5_PHYPA Physcomitrella patens ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, HMMPfam:PF00319, HMMPanther:PTHR11945:SF19, HMMPanther:PTHR11945, FPrintScan:PR00404
CAI39207 358 Physcomitrella patens query 1 n y Q4W1W9_PHYPA Physcomitrella patens
PP001024021F 185 FrameD:1:557:2 pp(03/04):CSI:PP001024021F: PP_SD_13.Singlet not annotated Physcomitrella patens protonema 001 pSK- EcoRI Physcomitrella patens hit 1 n y Q6R777_PHYPA Physcomitrella patens
PP001064039R 80 FrameD:568:811:-2 pp(03/04):CSI:PP001064039R:**: PP_CL_10974.Singlet Homolog of (AJ421638) putative MADS-domain transcription factor [Physcomitrella patens] Physcomitrella patens hit 1 y n
PP004054209R 238 FrameD:1:715:1 pp(03/04):CSI:PP004054209R: PP_SD_13.Singlet not annotated Physcomitrella patens protonema 004 normalized contaminated pSK- EcoRI/XhoI Physcomitrella patens hit 1 y n
PP004071056R 150 FrameD:165:617:3 pp(03/04):SIN:PP004071056R:**: Homolog of (AJ421638) putative MADS-domain transcription factor [Physcomitrella patens] Physcomitrella patens hit 1 y n
PP015017242R 68 FrameD:38:244:2 pp(03/04):SIN:PP015017242R:****: Physcomitrella patens putative MADS-domain transcription factor (MADS2) gene, complete cds Physcomitrella patens hit 1 n y Q6R777_PHYPA Physcomitrella patens
PP015018008R 68 FrameD:20:226:2 pp(03/04):SIN:PP015018008R:****: Physcomitrella patens putative MADS-domain transcription factor (MADS2) gene, complete cds Physcomitrella patens hit 1 n y Q6R777_PHYPA Physcomitrella patens
PP020031351R 95 FrameD:161:448:2 [Translation of PP020031351R pp(03/04):CSI:PP020031351R: PP_SD_1.Singlet not annotated Physcomitrella patens sporophyte 020 directed normalized pUC19 NotI/AscI [corrected by FrameD] Physcomitrella patens hit 1 y n
PP020068028R 251 FrameD:1:757:3 pp(03/04):SIN:PP020068028R:**: Homolog of (AY509527) putative MADS-domain transcription factor [Physcomitrella patens] Physcomitrella patens hit 1 y n
PP_10974_C1 335 FrameD:1:1009:2 pp(03/04):CON:PP_10974_C1: contains: (COIL:coil) Physcomitrella patens hit 1 y n
PP_4697_C1 142 FrameD:13:441:-2 pp(03/04):CON:PP_4697_C1:**: Homolog of (AB067689) MADS-box protein PpMADS2 [Physcomitrella patens subsp. patens] Physcomitrella patens hit 1 y n superfamily:SSF55455, HMMSmart:SM00432, ProfileScan:PS50066, ScanRegExp:PS00350, HMMPfam:PF00319, HMMPanther:PTHR11945:SF19, HMMPanther:PTHR11945, FPrintScan:PR00404
PP_5074_C1 64 FrameD:583:779:-3 pp(03/04):CON:PP_5074_C1:**: Homolog of (AY509527) putative MADS-domain transcription factor [Physcomitrella patens] Physcomitrella patens hit 1 y n
PP_SD_13_C1 417 FrameD:535:1788:-2 pp(03/04):CON:PP_SD_13_C1:****: Physcomitrella patens putative MADS-domain transcription factor (MADS2) gene, complete cds Physcomitrella patens hit 1 n y Q6R777_PHYPA Physcomitrella patens superfamily:SSF55455, ProfileScan:PS50066, HMMSmart:SM00432, ScanRegExp:PS00350, HMMPfam:PF00319, FPrintScan:PR00404, HMMPanther:PTHR11945, HMMPanther:PTHR11945:SF19
PP_SD_13_C2 306 FrameD:65:985:2 pp(03/04):CON:PP_SD_13_C2:****: Physcomitrella patens subsp. patens mRNA for MADS-box protein PpMADS2, complete cds Physcomitrella patens hit 1 n y Q8LPA4_PHYPA Physcomitrella patens subsp. superfamily:SSF55455, ProfileScan:PS50066, HMMSmart:SM00432, ScanRegExp:PS00350, HMMPfam:PF00319, FPrintScan:PR00404, HMMPanther:PTHR11945, HMMPanther:PTHR11945:SF19
PP_SD_13_C3 166 FrameD:1:499:-3 pp(03/04):CON:PP_SD_13_C3:****: Physcomitrella patens putative MADS-domain transcription factor (MADS2) gene, complete cds Physcomitrella patens hit 1 y n
PP_SD_1_C1 372 FrameD:209:1327:-1 pp(03/04):CON:PP_SD_1_C1:****: Physcomitrella patens mRNA for putative MADS-domain transcription factor (m3 gene) Physcomitrella patens hit 1 n y Q8L6F5_PHYPA Physcomitrella patens HMMSmart:SM00432, ProfileScan:PS50066, superfamily:SSF55455, HMMPfam:PF00319, HMMPanther:PTHR11945:SF19, HMMPanther:PTHR11945, FPrintScan:PR00404
Q4W1W7_PHYPA 358 Putative MADS-domain transcription factor (Fragment) Physcomitrella patens hit 1 n y Q4W1W9_PHYPA Physcomitrella patens
Q4W1W8_PHYPA 360 Putative MADS-domain transcription factor (Fragment) Physcomitrella patens hit 1 n y Q4W1X0_PHYPA Physcomitrella patens
Q4W1W9_PHYPA 438 Putative MADS-domain transcription factor Physcomitrella patens hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q4W1X0_PHYPA 410 Putative MADS-domain transcription factor Physcomitrella patens hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q6QGY0_PHYPA 351 Putative MADS-domain transcription factor Physcomitrella patens hit 1 n y Q8L6F5_PHYPA Physcomitrella patens ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, HMMPfam:PF00319, FPrintScan:PR00404
Q6R777_PHYPA 417 Putative MADS-domain transcription factor Physcomitrella patens hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q6R778_PHYPA 416 Putative MADS-domain transcription factor Physcomitrella patens hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q8L6F4_PHYPA 380 Putative MADS-domain transcription factor Physcomitrella patens hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q8L6F5_PHYPA 372 Putative MADS-domain transcription factor Physcomitrella patens hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, HMMPfam:PF00319, FPrintScan:PR00404
Q8L6F6_PHYPA 380 Putative MADS-domain transcription factor Physcomitrella patens hit 1 y n superfamily:SSF55455, HMMSmart:SM00432, ProfileScan:PS50066, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404, ProfileScan:PS00012
Q8L6F7_PHYPA 372 Putative MADS-domain transcription factor Physcomitrella patens hit 1 n y Q8L6F5_PHYPA Physcomitrella patens ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, HMMPfam:PF00319, FPrintScan:PR00404
Q8LPA3_PHYPA 320 MADS-box protein PpMADS3 Physcomitrella patens subsp. hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404
Q8LPA4_PHYPA 306 MADS-box protein PpMADS2 Physcomitrella patens subsp. hit 1 y n ProfileScan:PS50066, HMMSmart:SM00432, superfamily:SSF55455, ProfileScan:PS00350, HMMPfam:PF00319, FPrintScan:PR00404

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