PlanTAP Family TF038

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main family LIM
sub family
accession number TF038
category TF
citation(s) Eliasson et al. (2000), Kawaoka et al. (2000)
number of members 61
number of non-redundant members 40
number of members in trees 40
number of queries 2
number of clusters 1
consensus domain(s) IPR001781, IPR008992
last modified 2006-08-02 16:31:40.590638
 

1 contributing PlanTAP Family Cluster(s) with phylogenetic tree(s):
TF038_66
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member species taxonomic profile

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in family clusters
is a? in tree? redundant?
graphical view of the family members' domain structures
 

61 members shown

member_name length description species is a in #clusters in tree redundant representative repr. species domains
AAW91667 197 query 1 y n HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, BlastProDom:PD000094, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, HMMPfam:PF00412, superfamily:SSF57716
AAW91686 193 query 1 y n ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
At1g01780.1 205 68408.m00088 LIM domain protein -related similar to LIM domain protein PLIM-2 GB:AAD15745 GI:4321401 from [Helianthus annuus] Arabidopsis thaliana hit 1 n y Q9LQ78_ARATH Arabidopsis thaliana HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
At1g10200.1 190 68408.m01037 transcription factor -related similar to transcription factor SF3 (pir|IS37656); similar to ESTs gb|T42207, gb|N37716, and emb|Z17491 Arabidopsis thaliana hit 1 n y Q9SY62_ARATH Arabidopsis thaliana HMMPanther:PTHR18973, HMMPanther:PTHR18973:SF70, BlastProDom:PD000094, ScanRegExp:PS00478, superfamily:SSF57716, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, HMMPfam:PF00412
At2g39900.1 200 68409.m04443 LIM-domain protein -related Arabidopsis thaliana hit 1 n y O04193_ARATH Arabidopsis thaliana HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, BlastProDom:PD000094, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, HMMPfam:PF00412, superfamily:SSF57716
At2g45800.1 226 68409.m05149 LIM-domain protein -related Arabidopsis thaliana hit 1 n y O80839_ARATH Arabidopsis thaliana HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
At3g55770.1 199 68410.m05721 transcription factor L2 Arabidopsis thaliana hit 1 n y Q9M047_ARATH Arabidopsis thaliana superfamily:SSF57716, BlastProDom:PD000094, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, HMMSmart:SM00132, HMMPfam:PF00412
At3g61230.1 211 68410.m06329 LIM domain protein LIM domain protein PLIM-2 - Helianthus annuus, EMBL:AF047353 Arabidopsis thaliana hit 1 n y Q500W4_ARATH Arabidopsis thaliana ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412, superfamily:SSF57716
O04193_ARATH 200 Putative LIM-domain protein (At2g39900/T28M21.6) Arabidopsis thaliana hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
O80839_ARATH 226 Putative LIM-domain protein Arabidopsis thaliana hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
P93652_ARATH 172 Transcription factor L2 Arabidopsis thaliana hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q2V2R7_ARATH 195 Protein At2g45800 Arabidopsis thaliana hit 1 y n ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q500W4_ARATH 213 At3g61230 Arabidopsis thaliana hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q94JX5_ARATH 190 Putative transcription factor (Pir|IS37656) Arabidopsis thaliana hit 1 n y Q9SY62_ARATH Arabidopsis thaliana ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9LQ78_ARATH 261 T1N6.19 protein Arabidopsis thaliana hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9M047_ARATH 199 Transcription factor L2 Arabidopsis thaliana hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9M2E1_ARATH 211 LIM domain protein Arabidopsis thaliana hit 1 n y Q500W4_ARATH Arabidopsis thaliana ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9SY62_ARATH 223 F14N23.8 Arabidopsis thaliana hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q306K1_BRANA 189 LIM domain protein Brassica napus hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q54FV6_DICDI 472 Hypothetical protein Dictyostelium discoideum hit 1 y n ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q59HI2_EUCCA 188 Transcription factor lim1 Eucalyptus camaldulensis hit 1 y n HMMPanther:PTHR18973:SF70, superfamily:SSF57716, HMMPanther:PTHR18973, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q59HI3_EUCGL 188 Transcription factor lim1 Eucalyptus globulus hit 1 y n HMMPanther:PTHR18973:SF70, superfamily:SSF57716, HMMPanther:PTHR18973, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q8VWW1_GOSHI 189 LIM domain protein Gossypium hirsutum hit 1 y n ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q549A3_HELAN 219 LIM domain protein PLIM1a Helianthus annuus hit 1 y n superfamily:SSF57716, BlastProDom:PD000094, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, HMMSmart:SM00132, HMMPfam:PF00412
Q9SP33_HELAN 188 LIM domain protein WLIM1 Helianthus annuus hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9SP34_HELAN 214 LIM domain protein PLIM1b Helianthus annuus hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9XHG9_HELAN 188 LIM domain protein WLIM-1 Helianthus annuus hit 1 n y Q9SP33_HELAN Helianthus annuus ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9ZPP6_HELAN 240 LIM domain protein PLIM-2 Helianthus annuus hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
SF3_HELAN 219 Pollen-specific protein SF3 Helianthus annuus hit 1 n y Q549A3_HELAN Helianthus annuus superfamily:SSF57716, BlastProDom:PD000094, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, HMMSmart:SM00132, HMMPfam:PF00412
Q56R05_LYCES 179 Putative pollen specific LIM domain-containing protein (Putative pollen specific LIM domain protein) Lycopersicon esculentum hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, HMMSmart:SM00132, HMMPfam:PF00412
P93356_TOBAC 189 LIM-domain SF3 protein (LIM domain protein WLIM2) Nicotiana tabacum hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q8SBC6_TOBAC 193 Transcription factor LIM Nicotiana tabacum hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q8SBC7_TOBAC 193 Transcription factor LIM Nicotiana tabacum hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9LLY3_TOBAC 212 LIM domain protein PLIM-2 Nicotiana tabacum hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9SNX3_TOBAC 181 Pollen specific LIM domain protein 1b Nicotiana tabacum hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9SNX4_TOBAC 191 Pollen specific LIM domain protein 1a Nicotiana tabacum hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9SP40_TOBAC 191 LIM domain protein PLIM1 Nicotiana tabacum hit 1 n y Q9SNX4_TOBAC Nicotiana tabacum ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9SP54_TOBAC 193 LIM domain protein WLIM1 Nicotiana tabacum hit 1 y n superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9SXJ0_TOBAC 200 Transcription factor Ntlim1 Nicotiana tabacum hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q2QQ10_ORYSA 195 Pollen specific LIM domain protein 1b Oryza sativa hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q67VC7_ORYSA 1303 Putative pollen-specific LIM domain protein Oryza sativa hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q6H7C8_ORYSA 206 Putative LIM domain protein PLIM-2 Oryza sativa hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q7F9R9_ORYSA 201 OSJNBb0039L24.7 protein (OSJNBa0081C01.26 protein) Oryza sativa hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q84Q79_ORYSA 196 Putative LIM-domain protein Oryza sativa hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9FVZ1_ORYSA 224 LIM domain protein, putative Oryza sativa hit 1 y n ProfileScan:PS00478, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
2512.m00092 206 |||LIM domain protein PLIM-2|o_sativa|chr_2|OJ1112_G03|2512 Oryza sativa japonica cultivar-group hit 1 n y Q6H7C8_ORYSA Oryza sativa HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
3840.m00206 206 |||LIM domain protein PLIM-2|o_sativa|chr_2|P0010C01|3840 Oryza sativa japonica cultivar-group hit 1 n y Q6H7C8_ORYSA Oryza sativa HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
3860.m00142 206 |||LIM domain protein PLIM-2|o_sativa|chr_2|P0408D11|3860 Oryza sativa japonica cultivar-group hit 1 n y Q6H7C8_ORYSA Oryza sativa HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
4324.m00187 1303 |||LIM domain, putative|o_sativa|chr_6|OSJNBa0068B06|4324 Oryza sativa japonica cultivar-group hit 1 n y Q67VC7_ORYSA Oryza sativa superfamily:SSF57716, HMMPanther:PTHR18973, HMMPanther:PTHR18973:SF70, BlastProDom:PD000094, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, HMMPfam:PF00412
43.m00081 224 ||OSJNBb0073N24.9|putative LIM domain protein|o_sativa|chr_10|OSJNBb0073N24|43 Oryza sativa japonica cultivar-group hit 1 n y Q9FVZ1_ORYSA Oryza sativa HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, BlastProDom:PD000094, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, HMMPfam:PF00412, superfamily:SSF57716
6064.m00106 195 |||pollen specific LIM domain protein 1b|o_sativa|chr_12|OSJNBb0078B20|6064 Oryza sativa japonica cultivar-group hit 1 n y Q2QQ10_ORYSA Oryza sativa superfamily:SSF57716, HMMPanther:PTHR18973, HMMPanther:PTHR18973:SF70, BlastProDom:PD000094, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, HMMPfam:PF00412
7020.m00108 196 |||LIM domain, putative|o_sativa|chr_3|OJ1364E02|7020 Oryza sativa japonica cultivar-group hit 1 n y Q84Q79_ORYSA Oryza sativa HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
8146.m00163 201 |||LIM domain, putative|o_sativa|chr_4|OSJNBa0081C01|8146 Oryza sativa japonica cultivar-group hit 1 n y Q7F9R9_ORYSA Oryza sativa HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
8178.m00130 201 |||Y11002 LIM-domain SF3 protein|o_sativa|chr_4|OSJNBb0039L24|8178 Oryza sativa japonica cultivar-group hit 1 n y Q7F9R9_ORYSA Oryza sativa HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMSmart:SM00132, BlastProDom:PD000094, HMMPfam:PF00412, superfamily:SSF57716
Q9ZTN6_PETHY 195 PGPS/D1 Petunia hybrida hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
PP020049066R 166 FrameD:146:644:2 pp(03/04):SIN:PP020049066R:***: Q8SBC8 Transcription factor LIM Physcomitrella patens hit 1 y n ScanRegExp:PS00478, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, HMMPanther:PTHR18973:SF70, HMMPanther:PTHR18973, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412, superfamily:SSF57716
PP_1585_C2 184 FrameD:1:554:-2 pp(03/04):CON:PP_1585_C2: contains: Zn-binding protein, LIM(InterPro:IPR001781,PFAM:PF00412) Physcomitrella patens hit 1 y n HMMPanther:PTHR18973:SF70, superfamily:SSF57716, HMMPanther:PTHR18973, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
PP_4563_C1 191 FrameD:43:618:-3 pp(03/04):CON:PP_4563_C1:**: Homolog of (AF184886) LIM domain protein WLIM2 [Nicotiana tabacum] Physcomitrella patens hit 1 y n HMMPanther:PTHR18973:SF70, superfamily:SSF57716, HMMPanther:PTHR18973, ScanRegExp:PS00478, superfamily:SSF50203, Gene3D:G3D.2.10.110.10, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q8SBC8_POPKI 197 Transcription factor LIM Populus kitakamiensis hit 1 y n ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q8SBC9_POPKI 197 Transcription factor LIM Populus kitakamiensis hit 1 n y Q8SBC8_POPKI Populus kitakamiensis ProfileScan:PS00478, superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412
Q9M7F3_MAIZE 197 LIM transcription factor homolog Zea mays hit 1 y n superfamily:SSF50203, ProfileScan:PS50023, BlastProDom:PD000094, HMMSmart:SM00132, HMMPfam:PF00412

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