PlanTAP Family TR051

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main family TFIIS
sub family
accession number TR051
category TR
citation(s) Hirashima et al. (1988), Qian et al. (1993), Roeder (1996), Wind and Reines (2000)
number of members 152
number of non-redundant members 124
number of members in trees 124
number of queries 6
number of clusters 4
consensus domain(s) IPR001222, IPR001529, IPR003617, IPR003618, IPR006289, IPR010990, IPR012164, IPR013138
last modified 2006-08-02 16:31:40.590638
 

4 contributing PlanTAP Family Cluster(s) with phylogenetic tree(s):
TR051_208TR051_285TR051_288TR051_388
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member species taxonomic profile

filter member list according to taxonomic group 'Viruses' filter member list according to taxonomic group 'Archaea' filter member list according to taxonomic group 'Gram_positive_bacteria' filter member list according to taxonomic group 'Proteobacteria' filter member list according to taxonomic group 'Cyanobacteria' filter member list according to taxonomic group 'Other_bacteria' filter member list according to taxonomic group 'Rhodophyta' filter member list according to taxonomic group 'Chlorophyta' filter member list according to taxonomic group 'Heterokonts' filter member list according to taxonomic group 'Other_protists' filter member list according to taxonomic group 'Bryophyta' filter member list according to taxonomic group 'Poales' filter member list according to taxonomic group 'Asterids' filter member list according to taxonomic group 'Rosids' filter member list according to taxonomic group 'Other_plants' filter member list according to taxonomic group 'Fungi' filter member list according to taxonomic group 'Arthropoda' filter member list according to taxonomic group 'Rodents' filter member list according to taxonomic group 'Primates' filter member list according to taxonomic group 'Other_animals' colorbar for the taxonomic profile
in family clusters
is a? in tree? redundant?
graphical view of the family members' domain structures
 

152 members shown

member_name length description species is a in #clusters in tree redundant representative repr. species domains
Q9YEZ3_AERPE 104 104aa long hypothetical DNA-directed RNA polymerase subunit M Aeropyrum pernix hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q7PR45_ANOGA 114 ENSANGP00000015033 Anopheles gambiae str. PEST hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q7Q4H0_ANOGA 128 ENSANGP00000019703 (Fragment) Anopheles gambiae str. PEST hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q7QJB7_ANOGA 108 ENSANGP00000018390 Anopheles gambiae str. PEST hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
AAL67018 378 Arabidopsis thaliana query 1 n y Q8VXZ6_ARATH Arabidopsis thaliana HMMSmart:SM00509, HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
AAN13033 378 Arabidopsis thaliana query 1 n y Q8VXZ6_ARATH Arabidopsis thaliana HMMSmart:SM00509, HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
AAS88753 114 Arabidopsis thaliana query 1 n y Q6NLH0_ARATH Arabidopsis thaliana HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440
At2g38560.1 378 68409.m04287 elongation factor -related Arabidopsis thaliana hit 1 n y Q8VXZ6_ARATH Arabidopsis thaliana HMMSmart:SM00509, Gene3D:G3D.1.20.930.10, HMMTigr:TIGR01385, superfamily:SSF47676, HMMPanther:PTHR11477, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ScanRegExp:PS00466
At2g42730.1 737 68409.m04783 F-box protein family contains F-box domain Pfam:PF00646 Arabidopsis thaliana hit 1 n y Q9SJI3_ARATH Arabidopsis thaliana superfamily:SSF81383, Gene3D:G3D.3.80.10.10, ProfileScan:PS50181, HMMPfam:PF00646, superfamily:SSF52047, HMMPfam:PF07723, HMMSmart:SM00579, HMMPanther:PTHR11477, superfamily:SSF47676, HMMSmart:SM00509, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510
At3g16980.1 114 68410.m01953 RNA Polymerase II subunit 14.5 kD -related similar to RNA Polymerase II subunit 14.5 kD GB:CAA80649 [Homo sapiens] (Nucleic Acids Res. 21 (23), 5345-5350 (1993)) Arabidopsis thaliana hit 1 n y Q6NLH0_ARATH Arabidopsis thaliana HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440
At3g25940.1 119 68410.m02960 expressed protein Arabidopsis thaliana hit 1 n y Q9LU97_ARATH Arabidopsis thaliana HMMPanther:PTHR11239:SF3, Gene3D:G3D.2.20.28.10, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, superfamily:SSF57783, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ScanRegExp:PS00466
At4g07950.1 106 68411.m01151 DNA-directed RNA polymerase subunit -related similar to A. fulgidus DNA-directed RNA polymerase subunit M, GenBank accession number AE001019 Arabidopsis thaliana hit 1 n y Q9ZQC0_ARATH Arabidopsis thaliana superfamily:SSF57783, HMMPanther:PTHR11239:SF2, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
At4g16265.1 114 68411.m02244 expressed protein Arabidopsis thaliana hit 1 n y Q8L5V0_ARATH Arabidopsis thaliana HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440
At4g18720.1 266 68411.m02527 hypothetical protein KIAA0244 gene, Homo sapiens, D87685 Arabidopsis thaliana hit 1 n y Q9SN41_ARATH Arabidopsis thaliana HMMPanther:PTHR11477, superfamily:SSF47676, HMMSmart:SM00509, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, BlastProDom:PD000001
Q6NLH0_ARATH 114 At3g16980 Arabidopsis thaliana hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440
Q8L5V0_ARATH 114 RNA Polymerase II subunit 14.5 kD, putative Arabidopsis thaliana hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440
Q8VXZ6_ARATH 378 Putative elongation factor Arabidopsis thaliana hit 1 y n HMMSmart:SM00509, HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q9LNT2_ARATH 122 T20H2.16 protein Arabidopsis thaliana hit 1 y n ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q9LU97_ARATH 119 Similarity to transcription-associated zinc ribbon protein (Putative RNA polymerase I subunit) Arabidopsis thaliana hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q9SJI3_ARATH 737 Hypothetical protein At2g42730 Arabidopsis thaliana hit 1 y n ProfileScan:PS50181, HMMPfam:PF00646, HMMPfam:PF07723, HMMSmart:SM00579, HMMSmart:SM00509, HMMPfam:PF07500, HMMSmart:SM00510
Q9SN41_ARATH 266 Hypothetical protein F28A21.130 (Hypothetical protein AT4g18720) Arabidopsis thaliana hit 1 y n superfamily:SSF47676, HMMSmart:SM00509, HMMPfam:PF07500, HMMSmart:SM00510, BlastProDom:PD000001
Q9ZQC0_ARATH 106 Putative DNA-directed RNA polymerase subunit Arabidopsis thaliana hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q9ZVH8_ARATH 378 Putative elongation factor Arabidopsis thaliana hit 1 n y Q8VXZ6_ARATH Arabidopsis thaliana HMMSmart:SM00509, HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q750C6_ASHGO 112 DNA-directed RNA polymerase Ashbya gossypii hit 2 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q750E4_ASHGO 304 AGR011Wp Ashbya gossypii hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q753A7_ASHGO 125 DNA-directed RNA polymerase Ashbya gossypii hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
RPB9_ASHGO 122 DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6) Ashbya gossypii hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, ProfileScan:PS00466
Q4WJD3_ASPFU 116 RNA polymerase III subunit CII Aspergillus fumigatus hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q4X1W6_ASPFU 128 DNA directed RNA polymerase II 15 kDa subunit, putative Aspergillus fumigatus hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q5B5G1_EMENI 108 Hypothetical protein Aspergillus nidulans FGSC A4 hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q2U6V6_ASPOR 117 RNA polymerase III subunit C11 Aspergillus oryzae hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q2UH76_ASPOR 122 Predicted protein Aspergillus oryzae hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q2UMQ9_ASPOR 121 RNA polymerase I transcription factor TFIIS Aspergillus oryzae hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q2M2S7_BOVIN 108 Hypothetical protein Bos taurus hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q32P73_BOVIN 125 Hypothetical protein Bos taurus hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, ProfileScan:PS00466
Q5BL98_BRARE 118 Zgc:110825 Brachydanio rerio hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q5XJ93_BRARE 126 Zgc:103515 Brachydanio rerio hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440
Q6DGU0_BRARE 108 Zgc:92774 Brachydanio rerio hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q7ZUY7_BRARE 300 Transcription elongation factor A (SII), 2 Brachydanio rerio hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMSmart:SM00509, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q61A37_CAEBR 108 Hypothetical protein CBG13943 Caenorhabditis briggsae hit 1 y n HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q61G33_CAEBR 144 Hypothetical protein CBG11394 Caenorhabditis briggsae hit 1 y n HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q61W07_CAEBR 119 Hypothetical protein CBG04618 Caenorhabditis briggsae hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
O17587_CAEEL 119 Hypothetical protein Caenorhabditis elegans hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q965S0_CAEEL 167 Hypothetical protein Caenorhabditis elegans hit 1 y n HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q9N4B7_CAEEL 108 Hypothetical protein Caenorhabditis elegans hit 1 y n HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q59T94_CANAL 305 Hypothetical protein DST1 Candida albicans SC5314 hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q59Z13_CANAL 123 Hypothetical protein RPA12 Candida albicans SC5314 hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q59Z24_CANAL 112 Likely RNA polymerase II core subunit Rpb9 Candida albicans SC5314 hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q5A5N9_CANAL 111 Hypothetical protein RPC11 Candida albicans SC5314 hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q6FUU6_CANGA 128 DNA-directed RNA polymerase Candida glabrata hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
RPB9_CANGA 122 DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6) Candida glabrata hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
cr162468 109 Chlamydomonas reinhardtii hit 1 y n superfamily:SSF57783, HMMPanther:PTHR11239:SF2, HMMPIR:PIRSF005586, HMMPanther:PTHR11239, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ScanRegExp:PS00466
cr163799 124 Chlamydomonas reinhardtii hit 1 y n HMMPanther:PTHR11239:SF3, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
cr164104 118 Chlamydomonas reinhardtii hit 1 y n superfamily:SSF57783, HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMSmart:SM00440
Q5KEF1_CRYNE 132 RNA polymerase III smallest subunit, putative Cryptococcus neoformans hit 1 n y Q55P07_CRYNE Cryptococcus neoformans var. HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q5KKH5_CRYNE 132 DNA-directed RNA polymerase i 13.7 kDa polypeptide, putative (EC 2.7.7.6) Cryptococcus neoformans hit 1 n y Q55VR4_CRYNE Cryptococcus neoformans var. HMMPanther:PTHR11239, HMMPanther:PTHR11239:SF3, superfamily:SSF57783, HMMPfam:PF02150, HMMPIR:PIRSF005586, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
Q55M04_CRYNE 123 Hypothetical protein Cryptococcus neoformans var. hit 1 y n HMMPfam:PF02150, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q55P07_CRYNE 132 Hypothetical protein Cryptococcus neoformans var. hit 1 y n ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q55VR4_CRYNE 132 Hypothetical protein Cryptococcus neoformans var. hit 1 y n HMMPanther:PTHR11239, HMMPanther:PTHR11239:SF3, superfamily:SSF57783, HMMPfam:PF02150, HMMPIR:PIRSF005586, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
Q5CES5_CRYHO 332 Transcription elongation factor TFIIS.h Cryptosporidium hominis hit 1 y n superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q5CPB7_CRYHO 167 DNA-directed RNA polymerase 2 subunit Cryptosporidium hominis hit 1 y n superfamily:SSF57783, HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133
Q5CUQ6_CRYPV 167 DNA-directed RNA polymerase 2 subunit Cryptosporidium parvum hit 1 y n superfamily:SSF57783, HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133
Q5CVE1_CRYPV 332 Transcription elongation factor TFIIS Cryptosporidium parvum hit 1 y n superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
CMG169C_1 124 probable RNA polymerase II subunit I Cyanidioschyzon merolae hit 1 y n superfamily:SSF57783, HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMSmart:SM00440
CMT501C_1 794 probable transcription elongation factor S-II (TFIIS) Cyanidioschyzon merolae hit 1 y n superfamily:SSF63748, HMMPfam:PF00855, HMMSmart:SM00293, ProfileScan:PS50812, Gene3D:G3D.1.20.930.10, superfamily:SSF47676, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, HMMPanther:PTHR11477, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ScanRegExp:PS00466
Q6BK95_DEBHA 112 Similar to CA1875|CaRPB9 Candida albicans CaRPB9 DNA-directed RNA polymerase II Debaryomyces hansenii hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q6BKA5_DEBHA 123 DNA-directed RNA polymerase Debaryomyces hansenii hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q6BMC8_DEBHA 111 DNA-directed RNA polymerase Debaryomyces hansenii hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q6BU03_DEBHA 290 Similar to sp|P07273 Saccharomyces cerevisiae YGL043w DST1 TFIIS Debaryomyces hansenii hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q7KRM0_DROME 108 CG33785-PA, isoform A Drosophila melanogaster hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q9VD81_DROME 120 CG13418-PA Drosophila melanogaster hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
RPB9_DROME 129 DNA-directed RNA polymerase II 15.1 kDa polypeptide (EC 2.7.7.6) Drosophila melanogaster hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q8SRA1_ENCCU 99 DNA-DIRECTED RNA POLYMERASE I SUBUNIT M Encephalitozoon cuniculi hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q515Y4_ENTHI 122 DNA-directed RNA polymerase I subunit, putative Entamoeba histolytica HM-1:IMSS hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q516R6_ENTHI 107 RNA polymerase III subunit, putative Entamoeba histolytica HM-1:IMSS hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q9GZ08_EUPCR 324 Transcription elongation factor TFIIS (Fragment) Euplotes crassus hit 1 n y Q9GZ09_EUPCR Euplotes crassus superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q9GZ09_EUPCR 328 Transcription elongation factor TFIIS Euplotes crassus hit 1 y n superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q4I2K7_GIBZE 110 Hypothetical protein Gibberella zeae hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
RPA12_HUMAN 126 DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain containing protein 1) Homo sapiens hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
RPB9_HUMAN 125 DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5) Homo sapiens hit 1 y n HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, superfamily:SSF57783, HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ScanRegExp:PS01030, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMSmart:SM00440, ScanRegExp:PS00466
RPC11_HUMAN 108 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III C11 subunit) (HsC11p) (hRPC11) Homo sapiens hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q6WCQ3_IXOSC 108 RNA polymerase III Ixodes scapularis hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q6CKN3_KLULA 292 Similar to sp|P07273 Saccharomyces cerevisiae YGL043w DST1 TFIIS Kluyveromyces lactis hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q6CS79_KLULA 122 DNA-directed RNA polymerase Kluyveromyces lactis hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q6CV91_KLULA 160 DNA-directed RNA polymerase Kluyveromyces lactis hit 1 y n HMMPfam:PF02150, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q70W34_KLULA 112 DNA-directed RNA polymerase Kluyveromyces lactis hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q4R8A5_MACFA 117 Testis cDNA clone: QtsA-12982, similar to human transcription elongation factor A (SII), 1 (TCEA1),transcript variant 2, Macaca fascicularis hit 1 y n superfamily:SSF52943, HMMPfam:PF07500, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
RPA12_MACMU 126 DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain containing protein 1) Macaca mulatta hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
RPOM_METTH 136 DNA-directed RNA polymerase subunit M (EC 2.7.7.6) Methanobacterium thermoautotrophicum hit 1 y n HMMPfam:PF02150, HMMTigr:TIGR01384, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q8BU05_MOUSE 107 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430007E16 product:SIMILAR TO POLYMERASE (RNA) III (DNA DIRECTED) POLYPEPTIDE K (12.3 kDa) homolog Mus musculus hit 1 n y RPC11_MOUSE Mus musculus HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
RPA12_MOUSE 123 DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain containing protein 1) Mus musculus hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
RPB9_MOUSE 125 DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5) Mus musculus hit 1 y n HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, superfamily:SSF57783, HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ScanRegExp:PS01030, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMSmart:SM00440, ScanRegExp:PS00466
RPC11_MOUSE 108 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III C11 subunit) Mus musculus hit 1 y n superfamily:SSF57783, HMMPanther:PTHR11239:SF2, HMMPIR:PIRSF005586, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ScanRegExp:PS00466
Q6MUM9_NEUCR 112 Probable DNA-directed RNA polymerase III subunit C11 Neurospora crassa hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q2QNM4_ORYSA 114 RNA Polymerase II subunit 14.5 kD, putative Oryza sativa hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440
Q6EU09_ORYSA 110 Putative DNA-directed RNA polymerase II (Putative DNA-directed RNA polymerase III) Oryza sativa hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q75GR3_ORYSA 315 Putative transcription elongation factor, 5'-partial (Fragment) Oryza sativa hit 2 n y Q84TW3_ORYSA Oryza sativa HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q84TW3_ORYSA 367 Putative transcription elongation factor Oryza sativa hit 2 y n HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q8GSD5_ORYSA 116 Putative RNA Polymerase II subunit 14.5 kD Oryza sativa hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133
Q8H2K0_ORYSA 373 Putative transcription elongation factor Oryza sativa hit 2 y n HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q9AUR4_ORYSA 126 Putative RNA polymerase I subunit Oryza sativa hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
2061.m00224 373 |||transcription elongation factor S-II|o_sativa|chr_7|OJ1203_D08|2061 Oryza sativa japonica cultivar-group hit 2 n y Q8H2K0_ORYSA Oryza sativa HMMSmart:SM00509, HMMTigr:TIGR01385, superfamily:SSF47676, Gene3D:G3D.1.20.930.10, HMMPanther:PTHR11477, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ScanRegExp:PS00466
4216.m00321 114 |||RNA Polymerase II subunit 14.5 kD, putative|o_sativa|chr_3|OSJNa0049F05|4216 Oryza sativa japonica cultivar-group hit 1 n y 5056.m00140 Oryza sativa japonica cultivar-group HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440
5056.m00140 136 |||AY084946 RNA Polymerase II subunit 14.5 kD, putative|o_sativa|chr_3|OSJNAb0079B22|5056 Oryza sativa japonica cultivar-group hit 1 y n superfamily:SSF57783, HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMSmart:SM00440
6131.m00140 373 |||transcription elongation factor S-II|o_sativa|chr_7|OSJNBa0016A21|6131 Oryza sativa japonica cultivar-group hit 2 n y Q8H2K0_ORYSA Oryza sativa HMMSmart:SM00509, HMMTigr:TIGR01385, superfamily:SSF47676, Gene3D:G3D.1.20.930.10, HMMPanther:PTHR11477, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ScanRegExp:PS00466
6683.m00205 367 ||OSJNBa0094J08.31|putative transcription elongation factor|o_sativa|chr_3|OSJNBa0094J08|6683 Oryza sativa japonica cultivar-group hit 2 n y Q84TW3_ORYSA Oryza sativa superfamily:SSF47676, HMMSmart:SM00509, Gene3D:G3D.1.20.930.10, HMMTigr:TIGR01385, HMMPanther:PTHR11477, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ScanRegExp:PS00466
6744.m00045 367 |||transcription elongation factor S-II|o_sativa|chr_3|OSJNBb0042K11|6744 Oryza sativa japonica cultivar-group hit 2 n y Q84TW3_ORYSA Oryza sativa superfamily:SSF47676, HMMSmart:SM00509, Gene3D:G3D.1.20.930.10, HMMTigr:TIGR01385, HMMPanther:PTHR11477, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ScanRegExp:PS00466
7312.m00160 114 |||RNA Polymerase II subunit 14.5 kD, putative|o_sativa|chr_12|OSJNBa0028L05|7312 Oryza sativa japonica cultivar-group hit 1 n y Q2QNM4_ORYSA Oryza sativa HMMPanther:PTHR11239, HMMPanther:PTHR11239:SF1, HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440
761.m00063 126 ||OSJNBb0033N16.2|putative RNA polymerase I subunit|o_sativa|chr_3|OSJNBb0033N16|761 Oryza sativa japonica cultivar-group hit 1 n y Q9AUR4_ORYSA Oryza sativa superfamily:SSF63393, HMMPanther:PTHR11239:SF3, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
8348.m00034 315 ||OSJNBb0042K11.5|putative transcription elongation factor, 5'-partial|o_sativa|chr_3|OSJNBb0042K11|8348 Oryza sativa japonica cultivar-group hit 2 n y Q84TW3_ORYSA Oryza sativa HMMTigr:TIGR01385, superfamily:SSF47676, HMMPanther:PTHR11477, superfamily:SSF46942, HMMPfam:PF07500, HMMSmart:SM00510, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ScanRegExp:PS00466
AAK18841 126 Oryza sativa japonica cultivar-group query 1 n y Q9AUR4_ORYSA Oryza sativa HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
BAC20918 373 Oryza sativa japonica cultivar-group query 1 n y Q8H2K0_ORYSA Oryza sativa HMMTigr:TIGR01385, superfamily:SSF47676, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
BJ189029 110 FrameD:149:481:2 pp(03/04):CHI:BJ189029:**: Homolog of (AJ519802) RNA polymerase III C11 subunit [Kluyveromyces lactis] Physcomitrella patens hit 1 y n superfamily:SSF57783, HMMPanther:PTHR11239:SF2, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
PP015050313R 127 FrameD:112:495:1 [Translation of PP015050313R pp(03/04):SIN:PP015050313R:**: Homolog of (AY074322) putative elongation factor [Arabidopsis thaliana] [corrected by FrameD] Physcomitrella patens hit 2 y n HMMPanther:PTHR11477, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ScanRegExp:PS00466
PP_11488_C1 132 FrameD:1:401:3 pp(03/04):CON:PP_11488_C1:***: Q8VXZ6 Putative elongation factor Physcomitrella patens hit 1 y n HMMSmart:SM00510, HMMPfam:PF07500, superfamily:SSF46942, HMMPanther:PTHR11477, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ScanRegExp:PS00466
PP_1553_C1 114 FrameD:478:822:-3 pp(03/04):CON:PP_1553_C1:**: Homolog of (68416.m02169 DNA-directed RNA polymerase II, putative similar to SP|P36958 DNA-directed RNA polymerase II 15.1 kDa polypeptide EC 2.7.7.6) {Drosophila melanogaster}; contains Pfam profile PF02150: RNA polymerases M/15 Kd subunit Physcomitrella patens hit 1 y n HMMPanther:PTHR11239, HMMPanther:PTHR11239:SF1, HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMSmart:SM00440
PP_4166_C1 117 FrameD:1:356:3 pp(03/04):CON:PP_4166_C1:**: Homolog of OSJNBb0033N16.2|putative RNA polymerase I subunit|o_sativa|chr_3|OSJNBb0033N16|761 Physcomitrella patens hit 1 y n HMMPanther:PTHR11239:SF3, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
PP_4166_C2 98 FrameD:1:297:1 pp(03/04):CON:PP_4166_C2:**: Homolog of OSJNBb0033N16.2|putative RNA polymerase I subunit|o_sativa|chr_3|OSJNBb0033N16|761 Physcomitrella patens hit 1 y n
PP_4166_C3 150 FrameD:1:454:2 pp(03/04):CON:PP_4166_C3:**: Homolog of OSJNBb0033N16.2|putative RNA polymerase I subunit|o_sativa|chr_3|OSJNBb0033N16|761 Physcomitrella patens hit 1 y n HMMPanther:PTHR11239:SF3, HMMPanther:PTHR11239, HMMPIR:PIRSF005586, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
PP_7221_C2 110 FrameD:106:438:1 pp(03/04):CON:PP_7221_C2:**: Homolog of (AJ519802) RNA polymerase III C11 subunit [Kluyveromyces lactis] Physcomitrella patens hit 1 n y BJ189029 Physcomitrella patens superfamily:SSF57783, HMMPanther:PTHR11239:SF2, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
Q5FVH1_RAT 108 Hypothetical LOC366277 Rattus norvegicus hit 1 y n superfamily:SSF57783, HMMPanther:PTHR11239:SF2, HMMPIR:PIRSF005586, HMMPanther:PTHR11239, HMMPfam:PF02150, HMMSmart:SM00661, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ScanRegExp:PS00466
RPA12_RAT 123 DNA-directed RNA polymerase I subunit 12 (EC 2.7.7.6) (Nuclear RNA polymerase I small specific subunit Rpa12) (Zinc ribbon domain containing protein 1) Rattus norvegicus hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
RPA9_YEAST 125 DNA-directed RNA polymerase I 13.7 kDa polypeptide (EC 2.7.7.6) (A12.2) Saccharomyces cerevisiae hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
RPB9_YEAST 122 DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6) (DNA-directed RNA polymerase II 14.2 kDa polypeptide) (B12.6) Saccharomyces cerevisiae hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
RPC11_YEAST 110 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) Saccharomyces cerevisiae hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
TFS2_YEAST 309 Transcription elongation factor S-II (DNA strand transfer protein alpha) (STP-alpha) (DNA strand transferase 1) (Pyrimidine pathway regulatory protein 2) Saccharomyces cerevisiae hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMSmart:SM00509, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q5DAX2_SCHJA 126 SJCHGC05867 protein Schistosoma japonicum hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440
RPA9_SCHPO 119 DNA-directed RNA polymerase I 13.1 kDa polypeptide (EC 2.7.7.6) Schizosaccharomyces pombe hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
RPB9_SCHPO 113 DNA-directed RNA polymerase II subunit 9 (EC 2.7.7.6) (DNA-directed RNA polymerase II 13.2 kDa polypeptide) Schizosaccharomyces pombe hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440
RPC11_SCHPO 109 DNA-directed RNA polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) Schizosaccharomyces pombe hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
TFS2_SCHPO 293 Transcription elongation factor S-II (TFIIS) Schizosaccharomyces pombe hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMSmart:SM00509, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q8JH46_9PERC 108 POLR3K Sphoeroides nephelus hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q6QAQ8_PIG 105 DNA-directed RNA polymerase II (Fragment) Sus scrofa hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440
RPB9_PIG 125 DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5) Sus scrofa hit 1 y n HMMPanther:PTHR11239:SF1, HMMPanther:PTHR11239, superfamily:SSF57783, HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ScanRegExp:PS01030, Gene3D:G3D.2.20.25.10, ProfileScan:PS51133, HMMSmart:SM00440, ScanRegExp:PS00466
Q4RHC2_TETNG 108 Chromosome 3 SCAF15050, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n HMMPIR:PIRSF005586, HMMPfam:PF02150, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q4S925_TETNG 126 Chromosome undetermined SCAF14702, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440
Q4SAK5_TETNG 124 Chromosome undetermined SCAF14682, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n HMMPfam:PF07500, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q4SXD8_TETNG 141 Chromosome undetermined SCAF12445, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440
Q4T1I2_TETNG 147 Chromosome undetermined SCAF10575, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n ProfileScan:PS51133, HMMSmart:SM00440
tp155249 127 Thalassiosira pseudonana hit 1 y n superfamily:SSF46942, HMMPfam:PF07500, HMMPanther:PTHR11477, Gene3D:G3D.2.20.25.10, superfamily:SSF57783, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440
Q4UDQ7_THEAN 167 DNA-directed RNA polymerase 2 subunit, putative (EC 2.7.7.6) Theileria annulata hit 1 y n HMMPfam:PF02150, ProfileScan:PS51133
Q4N5T6_THEPA 167 DNA-directed RNA polymerase II subunit, putative Theileria parva hit 1 y n HMMPfam:PF02150, ProfileScan:PS51133
Q4N8B9_THEPA 324 Transcription elongation factor SII, putative Theileria parva hit 1 y n HMMPfam:PF07500, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q9HJG3_THEAC 100 Probable transcription-associated protein TFIIS Thermoplasma acidophilum hit 1 y n HMMSmart:SM00661, HMMPIR:PIRSF005586, HMMTigr:TIGR01384, HMMPfam:PF02150, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q4P1X5_USTMA 315 Hypothetical protein Ustilago maydis 521 hit 1 y n superfamily:SSF47676, HMMTigr:TIGR01385, HMMPfam:PF07500, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q4P4T4_USTMA 147 Hypothetical protein Ustilago maydis 521 hit 1 y n HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096, ProfileScan:PS00466
Q5EAU6_XENLA 125 Hypothetical protein Xenopus laevis hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS01030, ProfileScan:PS51133, HMMSmart:SM00440
Q6P7G0_XENLA 108 MGC68582 protein Xenopus laevis hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096
Q91692_XENLA 292 Transcription elongation factor type xTFIIS.l (LOC398066 protein) Xenopus laevis hit 1 y n HMMTigr:TIGR01385, superfamily:SSF47676, HMMSmart:SM00509, HMMPfam:PF07500, HMMSmart:SM00510, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
AAH89759 108 Xenopus tropicalis query 1 n y Q5FVV0_XENTR Xenopus tropicalis HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q5FVV0_XENTR 108 MGC108467 protein Xenopus tropicalis hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, HMMSmart:SM00661, ProfileScan:PS51133, HMMPfam:PF01096, HMMSmart:SM00440, ProfileScan:PS00466
Q6C866_YARLI 110 DNA-directed RNA polymerase Yarrowia lipolytica hit 1 y n HMMPfam:PF02150, HMMPIR:PIRSF005586, ProfileScan:PS51133, HMMSmart:SM00440, HMMPfam:PF01096

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