PlanTAP Family TR048

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main family TFIIE
sub family
accession number TR048
category TR
citation(s) Ohkuma (1997), Ohkuma et al. (1991), Okuda et al. (2000), Roeder (1996)
number of members 68
number of non-redundant members 45
number of members in trees 45
number of queries 2
number of clusters 2
consensus domain(s) IPR002853, IPR003166, IPR011991
last modified 2006-08-02 16:31:40.590638
 

2 contributing PlanTAP Family Cluster(s) with phylogenetic tree(s):
TR048_359TR048_464
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member species taxonomic profile

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in family clusters
is a? in tree? redundant?
graphical view of the family members' domain structures
 

68 members shown

member_name length description species is a in #clusters in tree redundant representative repr. species domains
At1g03280.1 479 68408.m00274 expressed protein Contains similarity to transcription initiation factor IIE, alpha subunit gb|X63468 from Homo sapiens Arabidopsis thaliana hit 1 n y Q9ZVS9_ARATH Arabidopsis thaliana HMMPanther:PTHR13097, Gene3D:G3D.1.10.10.10, superfamily:SSF46785, HMMPfam:PF02002, HMMSmart:SM00531
At4g20330.1 286 68411.m02712 expressed protein TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT - XENOPUS LAEVIS,SWALL:T2EB_XENLA Arabidopsis thaliana hit 1 n y Q9SUP3_ARATH Arabidopsis thaliana HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
At4g20340.1 527 68411.m02713 hypothetical protein transcription factor IIE alpha- Xenopus laevis,PIR2:S26646 Arabidopsis thaliana hit 1 n y Q9SUP2_ARATH Arabidopsis thaliana HMMPanther:PTHR13097, HMMPfam:PF02002, superfamily:SSF46785, Gene3D:G3D.1.10.10.10, HMMSmart:SM00531
At4g20810.1 416 68411.m02761 hypothetical protein transcription factor IIE, Xenopus laevis, PIR2:S26646 Arabidopsis thaliana hit 1 n y Q9SVG6_ARATH Arabidopsis thaliana HMMPanther:PTHR13097, superfamily:SSF46785, HMMPfam:PF02002, HMMSmart:SM00531
At4g21010.1 275 68411.m02780 expressed protein transcription factor TFIIE-beta, Xenopus laevis, PIR2:S26495 Arabidopsis thaliana hit 1 n y Q9SUB3_ARATH Arabidopsis thaliana HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
Q6S7C0_ARATH 273 TFIIE-beta 1 (Fragment) Arabidopsis thaliana hit 1 n y Q9SUB3_ARATH Arabidopsis thaliana HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
Q6S7C3_ARATH 275 TFIIE-alpha 2 (Fragment) Arabidopsis thaliana hit 1 y n HMMPanther:PTHR13097
Q6S7C4_ARATH 215 TFIIE-alpha 2 (Fragment) Arabidopsis thaliana hit 1 y n HMMPfam:PF02002, Gene3D:G3D.1.10.10.10, HMMSmart:SM00531, superfamily:SSF47661
Q93ZW3_ARATH 479 Hypothetical protein At1g03280 (TFIIE-alpha 1) Arabidopsis thaliana hit 1 n y Q9ZVS9_ARATH Arabidopsis thaliana Gene3D:G3D.1.10.10.10, HMMPfam:PF02002, HMMSmart:SM00531
Q9SUB3_ARATH 275 Hypothetical protein T13K14.170 (Hypothetical protein At4g21010) Arabidopsis thaliana hit 1 y n HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
Q9SUP2_ARATH 527 Hypothetical protein F9F13.4 (Hypothetical protein AT4g20340) Arabidopsis thaliana hit 1 y n HMMPfam:PF02002, Gene3D:G3D.1.10.10.10, HMMSmart:SM00531, superfamily:SSF57903
Q9SUP3_ARATH 286 Hypothetical protein F9F13.2 (Hypothetical protein AT4g20330) (AT4g20330/F9F13_2) (TFIIE-beta 2) Arabidopsis thaliana hit 1 y n HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
Q9SVG6_ARATH 416 Hypothetical protein F21C20.160 (Hypothetical protein AT4g20810) Arabidopsis thaliana hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
Q9ZVS9_ARATH 506 F15K9.12 protein Arabidopsis thaliana hit 1 y n Gene3D:G3D.1.10.10.10, HMMPfam:PF02002, HMMSmart:SM00531
Q5B1T2_EMENI 293 Hypothetical protein Aspergillus nidulans FGSC A4 hit 1 y n HMMPanther:PTHR12716:SF2, HMMPanther:PTHR12716, superfamily:SSF46785
Q2ULE8_ASPOR 291 Transcription initiation factor IIE Aspergillus oryzae hit 1 y n HMMPanther:PTHR12716:SF2, HMMPanther:PTHR12716
Q5SQE1_BRARE 447 Novel protein similar to vertebrate general transcription factor IIE polypeptide 1 alpha 56kDa (GTF2E1) Brachydanio rerio hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
cr166117 224 Chlamydomonas reinhardtii hit 1 y n HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716, superfamily:SSF46785
CML130C_1 259 similar to transcription initiation factor TFIIE beta subunit Cyanidioschyzon merolae hit 1 y n HMMPanther:PTHR12716
Q54KJ8_DICDI 276 Hypothetical protein Dictyostelium discoideum hit 1 y n Gene3D:G3D.1.10.10.10
Q86AT7_DICDI 187 Similar to Plasmodium falciparum. Homologue of human HSPC025 (Hypothetical protein) Dictyostelium discoideum hit 1 y n HMMPfam:PF02002
Q8SRL9_ENCCU 291 TRANSCRIPTION INITIATION FACTOR TFIIE ALPHA SUBUNIT Encephalitozoon cuniculi hit 1 y n HMMPfam:PF02002
Q8SRS3_ENCCU 247 TRANSCRIPTION INITIATION FACTOR TFIIE BETA SUBUNIT Encephalitozoon cuniculi hit 1 y n Gene3D:G3D.1.10.10.10
Q5ZIE1_CHICK 290 Hypothetical protein Gallus gallus hit 1 y n Gene3D:G3D.1.10.10.10, HMMPfam:PF02186
Q53F88_HUMAN 357 General transcription factor IIE, polypeptide 1 (Alpha subunit, 56kD) variant (Fragment) Homo sapiens hit 1 n y T2EA_HUMAN Homo sapiens HMMPfam:PF02002, HMMSmart:SM00531
T2EA_HUMAN 439 Transcription initiation factor IIE alpha subunit (TFIIE-alpha) (General transcription factor IIE 56 kDa subunit) Homo sapiens hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
T2EB_HUMAN 291 Transcription initiation factor IIE beta subunit (TFIIE-beta) Homo sapiens hit 1 y n Gene3D:G3D.1.10.10.10, HMMPfam:PF02186
Q6CMP5_KLULA 530 Similarities with sp|P36100 Saccharomyces cerevisiae YKL028w TFA1 TFIIE subunit Kluyveromyces lactis hit 1 y n Gene3D:G3D.1.10.10.10, HMMPfam:PF02002, HMMSmart:SM00531
Q3TQQ1_MOUSE 439 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020031H22 product:Transcription initiation factor IIE, alpha subunit (TFIIE- alpha) (General transcription factor IIE 56 kDa subunit) homolog (2 cells egg cDNA, RIKEN full-length enriched library, clone:B020016H02 product:Transcription initiation factor IIE, alpha subunit (TFIIE- alpha) (General transcription factor IIE 56 kDa subunit) homolog) Mus musculus hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
Q3U5Y7_MOUSE 292 Bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830150B02 product:general transcription factor II E, polypeptide 2 (beta subunit), full insert sequence (Visual cortex cDNA, RIKEN full-length enriched library, clone:K430309E06 product:general transcription factor II E, polypeptide 2 (beta subunit), full insert sequence) (Bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830007C18 product:general transcription factor II E, polypeptide 2 (beta subunit), full insert sequence) Mus musculus hit 1 y n HMMPanther:PTHR12716:SF7, HMMPanther:PTHR12716, superfamily:SSF46785, Gene3D:G3D.1.10.10.10, HMMPfam:PF02186
Q3UIR2_MOUSE 281 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920057N17 product:general transcription factor II E, polypeptide 2 (beta subunit), full insert sequence Mus musculus hit 1 y n Gene3D:G3D.1.10.10.10, HMMPfam:PF02186
Q544T0_MOUSE 440 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030447H23 product:general transcription factor IIE, polypeptide 1 (alpha subunit, 56kDa), full insert sequence (NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630014J17 product:general transcription factor II E, polypeptide 1 (alpha subunit), full insert sequence) Mus musculus hit 1 y n HMMPanther:PTHR13097, superfamily:SSF46785, HMMPfam:PF02002, HMMSmart:SM00531, superfamily:SSF81790
Q8BV40_MOUSE 421 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730041A02 product:general transcription factor IIE, polypeptide 1 (alpha subunit, 56kDa), full insert sequence Mus musculus hit 1 y n HMMSmart:SM00531, HMMPfam:PF02002
T2EA_MOUSE 440 Transcription initiation factor IIE alpha subunit (TFIIE-alpha) (General transcription factor IIE 56 kDa subunit) Mus musculus hit 1 n y Q544T0_MOUSE Mus musculus HMMPanther:PTHR13097, superfamily:SSF46785, HMMPfam:PF02002, HMMSmart:SM00531, superfamily:SSF81790
T2EB_MOUSE 292 Transcription initiation factor IIE beta subunit (TFIIE-beta) Mus musculus hit 1 n y Q3U5Y7_MOUSE Mus musculus HMMPanther:PTHR12716:SF7, HMMPanther:PTHR12716, superfamily:SSF46785, Gene3D:G3D.1.10.10.10, HMMPfam:PF02186
Q2QXX3_ORYSA 350 Expressed protein Oryza sativa hit 1 y n HMMSmart:SM00531, HMMPfam:PF02002
Q2QY28_ORYSA 288 Expressed protein Oryza sativa hit 1 y n HMMPanther:PTHR13097
Q2RAU2_ORYSA 330 TFIIE alpha subunit, putative Oryza sativa hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
Q2RAU3_ORYSA 334 Hypothetical protein Oryza sativa hit 1 y n HMMPfam:PF02002
Q6ZB67_ORYSA 462 Hypothetical protein OJ1119_B10.8 Oryza sativa hit 1 y n Gene3D:G3D.1.10.10.10, HMMPfam:PF02002, HMMSmart:SM00531
Q8RU47_ORYSA 279 Putative Transcription initiation factor IIE, beta subunit (Expressed protein) Oryza sativa hit 1 y n Gene3D:G3D.1.10.10.10
3127.m00142 462 |||TFIIE alpha subunit, putative|o_sativa|chr_9|BACE008E01|3127 Oryza sativa japonica cultivar-group hit 1 n y Q6ZB67_ORYSA Oryza sativa superfamily:SSF46785, HMMPanther:PTHR13097, Gene3D:G3D.1.10.10.10, HMMPfam:PF02002, HMMSmart:SM00531, superfamily:SSF54060
3128.m00142 423 |||AY096668 unknown protein|o_sativa|chr_9|BACE069K11|3128 Oryza sativa japonica cultivar-group hit 1 n y Q6ZB67_ORYSA Oryza sativa HMMPanther:PTHR13097, HMMPfam:PF02002, HMMSmart:SM00531, Gene3D:G3D.1.10.10.10, superfamily:SSF46785, superfamily:SSF54060
3353.m00151 404 |||retrotransposon protein, putative, Ty3-gypsy sub-class|o_sativa|chr_3|OSJNBa0061L19|3353 Oryza sativa japonica cultivar-group hit 1 y n HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
3726.m00163 279 |||expressed protein|o_sativa|chr_10|OSJNBb0058B20|3726 Oryza sativa japonica cultivar-group hit 1 n y Q8RU47_ORYSA Oryza sativa HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716, superfamily:SSF46785, Gene3D:G3D.1.10.10.10
3726.m00212 279 |||expressed protein|o_sativa|chr_10|OSJNBb0058B20|3726 Oryza sativa japonica cultivar-group hit 1 n y Q8RU47_ORYSA Oryza sativa HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716, superfamily:SSF46785, Gene3D:G3D.1.10.10.10
4918.m00070 334 |||hypothetical protein|o_sativa|chr_11|OSJNBa0078E03|4918 Oryza sativa japonica cultivar-group hit 1 n y Q2RAU3_ORYSA Oryza sativa HMMPanther:PTHR13097, HMMPfam:PF02002, Gene3D:G3D.2.20.25.10
4918.m00071 330 |||hypothetical protein|o_sativa|chr_11|OSJNBa0078E03|4918 Oryza sativa japonica cultivar-group hit 1 n y Q2RAU2_ORYSA Oryza sativa superfamily:SSF46785, HMMPfam:PF02002, HMMSmart:SM00531, HMMPanther:PTHR13097
6549.m00124 288 |||expressed protein|o_sativa|chr_12|OJ1239_F07|6549 Oryza sativa japonica cultivar-group hit 1 n y Q2QY28_ORYSA Oryza sativa HMMPanther:PTHR13097
7059.m00119 350 |||expressed protein|o_sativa|chr_12|OSJNBb0034E23|7059 Oryza sativa japonica cultivar-group hit 1 n y Q2QXX3_ORYSA Oryza sativa HMMSmart:SM00531, HMMPfam:PF02002, HMMPanther:PTHR13097, superfamily:SSF57716
7391.m00096 462 |||AY096668 unknown protein|o_sativa|chr_8|OJ1119_B10|7391 Oryza sativa japonica cultivar-group hit 1 n y Q6ZB67_ORYSA Oryza sativa superfamily:SSF46785, HMMPanther:PTHR13097, Gene3D:G3D.1.10.10.10, HMMPfam:PF02002, HMMSmart:SM00531, superfamily:SSF54060
7418.m00170 185 |||AY096668 unknown protein|o_sativa|chr_12|OSJNBb0041E01|7418 Oryza sativa japonica cultivar-group hit 1 n y Q2QY28_ORYSA Oryza sativa HMMPanther:PTHR13097
AAP53614 279 Oryza sativa japonica cultivar-group query 1 n y Q8RU47_ORYSA Oryza sativa Gene3D:G3D.1.10.10.10
BAD03272 462 Oryza sativa japonica cultivar-group query 1 n y Q6ZB67_ORYSA Oryza sativa Gene3D:G3D.1.10.10.10, HMMPfam:PF02002, HMMSmart:SM00531
PP015005095R 200 FrameD:1:603:2 [Translation of PP015005095R pp(03/04):SIN:PP015005095R:**: Homolog of AY096668 unknown protein|o_sativa|chr_8|OJ1119_B10|7391 [corrected by FrameD] Physcomitrella patens hit 1 y n HMMPanther:PTHR13097
PP015007262R 153 FrameD:56:517:2 [Translation of PP015007262R pp(03/04):SIN:PP015007262R:**: Homolog of expressed protein|o_sativa|chr_10|OSJNBb0058B20|3726 [corrected by FrameD] Physcomitrella patens hit 1 y n HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
Q5R8H5_PONPY 439 Hypothetical protein DKFZp468A179 Pongo pygmaeus hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
Q5R228_SCHPO 285 General transcription factor spTFIIE beta subunit Schizosaccharomyces pombe hit 1 y n HMMPfam:PF02186
T2EA_SCHPO 448 Transcription initiation factor IIE alpha subunit (TFIIE-alpha) Schizosaccharomyces pombe hit 1 y n HMMPfam:PF02002
T2EB_SCHPO 285 Transcription initiation factor IIE beta subunit (TFIIE-beta) Schizosaccharomyces pombe hit 1 n y Q5R228_SCHPO Schizosaccharomyces pombe HMMPfam:PF02186
Q4T0Y5_TETNG 202 Chromosome undetermined SCAF10790, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n Gene3D:G3D.1.10.10.10, HMMPfam:PF02186
Q4T5L9_TETNG 439 Chromosome 2 SCAF9198, whole genome shotgun sequence. (Fragment) Tetraodon nigroviridis hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
Q2PEU1_TRIPR 270 Hypothetical protein Trifolium pratense hit 1 y n HMMPanther:PTHR12716:SF4, HMMPanther:PTHR12716
Q4P883_USTMA 433 Hypothetical protein Ustilago maydis 521 hit 1 y n HMMPfam:PF02002
Q4PFK9_USTMA 256 Hypothetical protein Ustilago maydis 521 hit 1 y n HMMPanther:PTHR12716:SF2, HMMPanther:PTHR12716
Q7ZTQ1_XENLA 263 Tfiiealpha-prov protein Xenopus laevis hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
Q91859_XENLA 433 Transcription factor IIE Xenopus laevis hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531
Q6DFT2_XENTR 435 MGC79483 protein Xenopus tropicalis hit 1 y n HMMPfam:PF02002, HMMSmart:SM00531

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