PlanTAP Family Cluster TR050_331

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cluster annotation
descriptionTR TFIIH
comment
 
homology filtering statistics
max_ident100nr_members40
f_quantile_ident36.39last_cutoff99
remaining40t_quantile_ident42.75
median_ident39.64from_step3
algorithmginsinr_distances2256
avg_ident43.47queries1
members48removed8
min_ident18.95max_iteration1
sd_ident14.26141
 
parameters of homology filtered tree
ml-16082.275671tree_length15.87336
total_paths55.00574redundancy0.725652042859527
nleafs40number_of_nodes69
resolution0.36longest_internal_branch_length0.546095
tree_height1.07854392156863number_of_terminals51
number_of_internals18fiala_stemminess0.370012758881207
 
distance matrix used in homology filtering step distribution plots of cluster member distances
msa column scores distribution
unrooted bootstrapped NJ tree of the full cluster prior to homology filteringrooted NJ tree with ML branch lengths of the full cluster prior to homology filteringhomology filtered rooted ML consensus tree
 
view corresponding family entry

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