PlanTAP Family Cluster TR050_320

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cluster annotation
descriptionTR TFIIH
comment
 
homology filtering statistics
max_ident100nr_members35
f_quantile_ident28.96last_cutoff99
remaining35t_quantile_ident37.58
median_ident32.53from_step2
algorithmginsinr_distances1722
avg_ident36.32queries1
members42removed7
min_ident13.56max_iteration2
sd_ident15.11899
 
parameters of homology filtered tree
ml-13472.973702tree_length26.1221
total_paths58.32106redundancy0.565243531320622
nleafs35number_of_nodes61
resolution0.428571428571429longest_internal_branch_length0.33593
tree_height1.35630372093023number_of_terminals43
number_of_internals18fiala_stemminess0.28021757089158
 
distance matrix used in homology filtering step distribution plots of cluster member distances
msa column scores distribution
unrooted bootstrapped NJ tree of the full cluster prior to homology filteringrooted NJ tree with ML branch lengths of the full cluster prior to homology filteringhomology filtered rooted ML consensus tree
 
view corresponding family entry

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